Hi I need to parse the following data using shell script
Table
-----
stage4n_abc 48
stage4o_abcd 4
adashpg_abc_HeartBeat 1
stage4l_asc 168
Can anyone gimme the solution.
I want each value to get stored in an array or variable and want the value to be greped from another file.... (1 Reply)
Hi guys,
I have got this working OK but I am sure there is a more efficient/elegant way of doing it, which I hope you can help me with.
It can be done in whatever is most suitable i.e perl/awk..
Any suggestions are welcome and many thanks in advance.
What I require is to extract... (5 Replies)
I am looking for a way to parse out some numbers from text. This is an excerpt from a larger script that I am trying to make run a little smoother.
Specifically this script is used to Capture DV video streams on a linux machine from the terminal. The setup does 6 streams at once, and this part... (3 Replies)
Hi all , I have a file with billing CDR records in it. I need to parse that information (row format) . The purpose is to compare full content. The example I have given below is a single line record but it has two portions, (1) the line start with “!” and end with “1.2.1.8” and (2) second part... (5 Replies)
Hi friends,
I need to parse the following data in the given format and get the desired output. I need a function, which takes the input as a parameter and the desired output will be returned from the function.
INPUT(single parameter as complete string)
A;BCF;DFG;FD
... (3 Replies)
Hi,
I do have a data file which is divided into compartments by ---------. I would like to extract (parse) some of the data and numbers either using awk or sed
The file has the format:
CATGC
Best GO enrichment:
Genes/ORF that have the motifs (genes are sorted by max(pa+pd+po)):
... (6 Replies)
Experts ,
Below is the data:
--- Physical volumes ---
PV Name /dev/dsk/c1t2d0
VG Name /dev/vg00
PV Status available
Allocatable yes
VGDA 2
Cur LV 8
PE Size (Mbytes) 8
Total PE 4350
Free PE 2036
Allocated PE 2314
Stale PE 0
IO Timeout (Seconds) default
--- Physical volumes ---... (5 Replies)
Hi folks
I have a script I wrote that basically parses a bunch of config and xml files works out were to add in the new content then spits out the data into a new file.
It all works - apart from the xml and config file format in the new file
with XML files the original XML (that ends up in... (2 Replies)
Discussion started by: dfinch
2 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)