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Full Discussion: xls2csv.py won't print to outfile
Top Forums UNIX for Dummies Questions & Answers xls2csv.py won't print to outfile Post 302680213 by jdilts on Wednesday 1st of August 2012 12:46:14 PM
Old 08-01-2012
xls2csv remotely on server doesn't work
Hi Corona688,

I moved the python tar to the server and installed it, but I'm getting an error. It seems that xls2cvs works locally, but I can't get it to work remotely.

Code:
ionadmin@ionT01:/results/analysis/output/Home/TuesdayJuly31_064/plugin_out/variantCaller_out/IonXpress_001$ python /home/ionadmin/tools/pyexcelerator-0.6.4.1/tools/xls2csv.py variants.xls > variants.csv
extracting data from variants.xls
Traceback (most recent call last):
  File "/home/ionadmin/tools/pyexcelerator-0.6.4.1/tools/xls2csv.py", line 17, in <module>
    for sheet_name, values in parse_xls(arg, 'cp1251'): # parse_xls(arg) -- default encoding
  File "/usr/local/lib/python2.6/dist-packages/pyExcelerator/ImportXLS.py", line 327, in parse_xls
    ole_streams = CompoundDoc.Reader(filename).STREAMS
  File "/usr/local/lib/python2.6/dist-packages/pyExcelerator/CompoundDoc.py", line 63, in __init__
    self.__build_header()
  File "/usr/local/lib/python2.6/dist-packages/pyExcelerator/CompoundDoc.py", line 105, in __build_header
    raise Exception, 'Not an OLE file.'
Exception: Not an OLE file.

My local computer is the latest Ubuntu LTS, but the server is Ubuntu 10.04.2 LTS. Do you think the server is missing dependencies that my local computer has?

EDIT! I am getting the same error both locally and remotely. I tested it on a fresh file in both places.
Last edited by jdilts; 08-01-2012 at 01:49 PM.. Reason: same error both local and remote
 

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LEARN ABOUT DEBIAN

pmdirs

PMDIRS(1p)						User Contributed Perl Documentation						PMDIRS(1p)

NAME

       pmdirs - print out module directories

DESCRIPTION

       This just prints out the current @INC path, one directory per line.  This is for people who don't want to parse through "perl -V" output or
       hack up their own calls to "perl -e".

EXAMPLES

	   $ pmdirs
	   /home/tchrist/perllib/i686-linux
	   /home/tchrist/perllib
	   /usr/local/devperl/lib/5.00554/i686-linux
	   /usr/local/devperl/lib/5.00554
	   /usr/local/devperl/lib/site_perl/5.00554/i686-linux
	   /usr/local/devperl/lib/site_perl/5.00554
	   .

       This also works for alternate version of Perl:

	   $ filsperl -S pmdirs
	   /home/tchrist/perllib
	   /usr/local/filsperl/lib/5.00554/i686-linux-thread
	   /usr/local/filsperl/lib/5.00554
	   /usr/local/filsperl/lib/site_perl/5.00554/i686-linux-thread
	   /usr/local/filsperl/lib/site_perl/5.00554
	   .

SEE ALSO

       perlrun(1), perlvar(1), lib(3)

AUTHORS and COPYRIGHTS
       Copyright (C) 1999 Tom Christiansen.

       Copyright (C) 2006-2008 Mark Leighton Fisher.

       This is free software; you can redistribute it and/or modify it under the terms of either: (a) the GNU General Public License as published
       by the Free Software Foundation; either version 1, or (at your option) any later version, or (b) the Perl "Artistic License".  (This is the
       Perl 5 licensing scheme.)

       Please note this is a change from the original pmtools-1.00 (still available on CPAN), as pmtools-1.00 were licensed only under the Perl
       "Artistic License".

perl v5.10.1							    2010-02-22								PMDIRS(1p)
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