07-28-2012
What if the file doesn't contain a match? Should its file name appear in the output or not? If so, should it be followed by a tab?
Regards,
Alister
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LEARN ABOUT DEBIAN
mcxalter
mcxalter(1) USER COMMANDS mcxalter(1)
NAME
mcxalter - various network transformations
SYNOPSIS
mcxalter [-imx <fname> (specify matrix input)] [-abc <fname> (specify label input)] [-tab <fname> (use tab file)] [-o <fname> (output)] [-tf
spec (apply tf-spec to input matrix)]
DESCRIPTION
This utility supplies various transformations of networks.
OPTIONS
-abc <fname> (label input)
The file name for input that is in label format.
-imx <fname> (input matrix)
The file name for input that is in mcl native matrix format.
-tab <fname> (use tab file)
This option causes the output to be printed with the labels found in the tab file. With -abc this option will, additionally, construct a
graph only on the labels found in the tab file. If this option is used in conjunction with -imx the tab domain and the matrix domain are
required to be identical.
-tf <tf-spec> (transform input matrix values)
Transform the input matrix values according to the syntax described in mcxio(5).
-o fname (output file)
Output file.
AUTHOR
Stijn van Dongen.
SEE ALSO
mcxio(5), mcx(1), mcxsubs(1), and mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.
mcxalter 12-068 8 Mar 2012 mcxalter(1)