Thanks Corona688 for the reply. Files containing CYTOCHROME C are treating your script very well. Above I took examples of those files which are throwing errors. The only difference here is, I am searching for pattern "LYSOZYME" instead of CYTOCHROME C. The script on a file (with extension .pdb) goes like this:
My little understanding tells me that your speculation is right. Something is messing up with RGX variable. I think ":" symbol just 1 line above to the line mentioned in error. As in file 132L.pdb, error mentions line 4 and I can see a ":" in line 3 and matching pattern in left hand side of it. Just to be clear, I don't want to extract line 3 or 4 here.
Thanks and Regards,
Ashwani
Quote:
Originally Posted by Corona688
I can't tell. CYTOCHROME C isn't anywhere in that file, so I have no idea what it's supposed to match. It must be picking up regex-like characters from the string it's trying to catch, which foul up the RGX variable when it's created.
You can put the script in a file easily enough like this:
I'm probably out for the rest of the day unfortunately. I'll check this evening if I can, for further details on your difficulty.
Hello ,
I need your help to extract a line in a big file , and this line is always 11 lines
before a specific pattern . Do you know a way via Awk ?
Thanks in advance
npn35 (17 Replies)
Hi,
the text line looks like this:
"test1" " " "test2" "test3" "test4" "10" "test 10 12" "00:05:58" "filename.bin" "3.3MB" "/dir/name" "18459"
what's the best way to select any of it? So I can for example get only the time or size and so on.
I was trying awk -F""" '{print $N}' but... (3 Replies)
The text line has the following formats:
what.ever.bla.bla.C01G06.BLA.BLA2
what.ever.bla.bla.C11G33.BLA.BLA2
what.ever.bla.bla.01x03.BLA.BLA2
what.ever.bla.bla.03x05.BLA.BLA2
what.ever.bla.bla.Part01.BLA.BLA2
and other similar ones, I need a way to select the "what.ever.bla.bla" part out... (4 Replies)
This is my first post, please be nice. I have tried to google and read different tutorials.
The task at hand is:
Input file input.txt (example)
abc123defhij-E-1234jslo
456ujs-W-abXjklp
From this file the task is to grep the -E- and -W- strings that are unique and write a new file... (5 Replies)
Hi Guys,
I have a situation wherein I need to extract two lines from below the search string.
Eg.
Current:
$ grep "$(date +'%a %b %e')" alert.log
Mon Apr 12 03:58:10 2010
Mon Apr 12 12:51:48 2010
$
Here I would like the display to be something like
Mon Apr 12... (6 Replies)
Hi,
I need to extract <APPNUMBER> tag alone, if the <college> haas IIT Chennai value. college tag value will have spaces embedded. Those spaces should not be suppresses.
My Source file
<Record><sno>1</sno><empid>E0001</empid><name>Rejsh suderam</name><college>IIT ... (3 Replies)
I have a file that has some lines starts with *
I want to get these lines, then get the word between "diac" and "lex".
ex.
file:
;;WORD AlAx
*0.942490 diac:Al>ax lex:>ax_1 bw:Al/DET+>ax/NOUN+ gloss:brother pos:noun prc3:0 prc2:0 prc1:0 prc0:Al_det per:na asp:na vox:na mod:na gen:m num:s... (4 Replies)
Hi all,
I got a file that contains the following content, Actually it is a part of the file content,
Installing XYZ XYZA Image, API 18, revision 2
Unzipping XYZ XYZA Image, API 18, revision 2 (1%)
Unzipping XYZ XYZA Image, API 18, revision 2 (96%)
Unzipping XYZ XYZA Image, API 18,... (7 Replies)
Hi,
I have below file structure and need to display hours, minutes and seconds as different fields.
Incase hour or minute field is not there it should default to zero.
*** Total elapsed time was 2 hours, 54 minutes and 40 seconds.
*** Total elapsed time was 42 minutes and 36 seconds.... (7 Replies)
Hi All,
i would like to get some help regarding extracting certain characters from a line grepped.
blahblah{1:F01IRVTUS30XXXX0000000001}{2:I103IRVTDEF0XXXXN}{4:blah
blahblah{1:F01IRVTUS30XXXX0000000001}{2:I103IRVTDEF0XXXXN}{4:blah... (10 Replies)
Discussion started by: mad man
10 Replies
LEARN ABOUT LINUX
cabextract
CABEXTRACT(1) General Commands Manual CABEXTRACT(1)NAME
cabextract - program to extract files from Microsoft cabinet (.cab) archives
SYNOPSIS
cabextract [-ddir] [-f] [-Fpattern] [-h] [-l] [-L] [-p] [-q] [-s] [-t] [-v] cabinet files ...
DESCRIPTION
cabextract is a program that un-archives files in the Microsoft cabinet file format (.cab) or any binary file which contains an embedded
cabinet file (frequently found in .exe files).
cabextract will extract all files from all cabinet files specified on the command line.
To extract a multi-part cabinet consisting of several files, only the first cabinet file needs to be given as an argument to cabextract as
it will automatically look for the remaining files. To prevent cabextract from extracting cabinet files you did not specify, use the -s
option.
OPTIONS
A summary of options is included below.
-d dir Extracts all files into the directory dir.
-f When testing or extracting cabinet files, corrupted MSZIP blocks will be ignored. A warning will be printed if a corrupted MSZIP
block is encountered.
-F pattern
Only files with names that match the shell pattern pattern shall be listed, tested or extracted. On non-GNU systems, this match may
be case-sensitive.
-h Prints a page of help and exits.
-l Lists the contents of the given cabinet files, rather than extracting them.
-L When extracting cabinet files, makes each extracted file's name lowercase.
-p Files shall be extracted to standard output.
-q When extracting cabinet files, suppresses all messages except errors and warnings.
-s When testing, listing or extracting cabinets which span multiple files, only cabinet files given on the command line shall be used.
-t Tests the integrity of the cabinet. Files are decompressed, but not written to disk or standard output. If the file successfully
decompresses, the MD5 checksum of the file is printed.
-v If given alone on the command line, prints the version of cabextract and exits. Given with a list of cabinet files, it will list the
contents of the cabinet files.
AUTHOR
This manual page was written by Stuart Caie <kyzer@4u.net>, based on the one written by Eric Sharkey <sharkey@debian.org>, for the Debian
GNU/Linux system.
SEE ALSO lcab(1)
October 30, 2005 CABEXTRACT(1)