07-18-2012
Thanks a lot alister
It is not typo. It should consider this as empty line and continue to compare.
I am generating files daily and i am comparing files generated today and on any previous days.
The data in the files are generated in sorted order, so i need to compare files to find the missing/changed line/new entry.
@shamrock: thank you for your quick response. i will test this out today.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi there
How can I compare data line by line from a file?
I need to compare the second value with the fourth to know if they are different.
If those values are different, I require to send my first value to the output until the complete file has been read.
This is my file:
0 FALSE... (1 Reply)
Discussion started by: loperam
1 Replies
2. Shell Programming and Scripting
Hi
I want to compare a string at fixed position 10-20 for all the lines starting with 6. if they dont match it should take a copy of a line starting with 1 and insert it before the line starting with 6. How do i this? Please help
Eg
1 test 1 765533 7643743
6 yes 3 5363653 373833
7... (9 Replies)
Discussion started by: appsguy616
9 Replies
3. Shell Programming and Scripting
Hello,
I have two files that I need to compare and print out the line from file2 that has the first 6 fields matching the first 6 fields in file1. Complicating this are the following restrictions
1. file1 is only a few thousand lines at most and file2 is greater than 2 million
2. I need to... (7 Replies)
Discussion started by: gillesc_mac
7 Replies
4. Shell Programming and Scripting
Hi,
My awk program is failing. I figured out using command
od -c filename
that the last line of the file doesnt end with a new line character.
Mine is an automated process because of this data is missing.
How do i handle this?
I want to append new line character at the end of last... (2 Replies)
Discussion started by: pinnacle
2 Replies
5. Shell Programming and Scripting
Hi Sorry to multipost. I am opening the new thread because the earlier threads head was misleading to my current doubt.
and i am stuck.
list=`cat /u/Test/programs`;
psg "ServTest" | awk -v listawk=$list '{
cmd_name=($5 ~ /^/)? $9:$8
for(pgmname in listawk)
... (6 Replies)
Discussion started by: Anteus
6 Replies
6. Shell Programming and Scripting
I have several hundreds of tiny files which need to be concatenated into one single line and all those in a single file. Some files have several blank lines. Tried to use this script but failed on it.
awk 'END { print r } r && !/^/ { print FILENAME, r; r = "" }{ r = r ? r $0 : $0 }' *.txt... (8 Replies)
Discussion started by: sdf
8 Replies
7. Shell Programming and Scripting
Hi All,
I'm trying to figure out which are the trusted-ips and which are not using a script file.. I have a file named 'ip-list.txt' which contains some ip addresses and another file named 'trusted-ip-list.txt' which also contains some ip addresses. I want to read a line from... (4 Replies)
Discussion started by: mjavalkar
4 Replies
8. Shell Programming and Scripting
I have a script that builds a database ~30 million lines, ~3.7 GB .cvs file. After multiple optimzations It takes about 62 min to bring in and parse all the files and used to take 10 min to remove duplicates until I was requested to add another column. I am using the highly optimized awk code:
awk... (34 Replies)
Discussion started by: Michael Stora
34 Replies
9. Shell Programming and Scripting
Hi all,
I have a log file say Test.log that gets updated continuously and it has data in pipe separated format. A sample log file would look like:
<date1>|<data1>|<url1>|<result1>
<date2>|<data2>|<url2>|<result2>
<date3>|<data3>|<url3>|<result3>
<date4>|<data4>|<url4>|<result4>
What I... (3 Replies)
Discussion started by: pat_pramod
3 Replies
10. Shell Programming and Scripting
My file (the output of an experiment) starts off looking like this,
_____________________________________________________________
Subjects incorporated to date: 001
Data file started on machine PKSHS260-05CP
**********************************************************************
Subject 1,... (9 Replies)
Discussion started by: samonl
9 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)
NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS
-c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)