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Top Forums Shell Programming and Scripting Cygwin - cannot execute binary file Post 302672273 by @man on Monday 16th of July 2012 06:46:31 AM
Old 07-16-2012
Question Cygwin - cannot execute binary file

Hey all,

I am using Cygwin on a machine running windows 7 64bits. I am about to use the following command:
Code:
$ faToTwoBit in.fa out.2bit

In the manual on sourceforge it mentioned:
"Download blat and faToTwoBit and set the blat_bin and fatotwobit_bin entries in config.txt to the fully qualified paths of the blat and faToTwoBit binaries." SourceForge.net: Comrad 0.1.0 - fusioncomrad

I downloaded blat and faToTwoBit and put them in /Usr/bin
But when I try to run the command I see this error:
Code:
-bash: /usr/bin/faToTwoBit: cannot execute binary file

BTW, I checked the file that I downloaded and it is an ELF 64-bit LSB executable.
Code:
$ file /usr/bin/faToTwoBit
/usr/bin/faToTwoBit: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.9, stripped

Anyone can help me?! :|
Tnx
 

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GZEXE(1)                                                      General Commands Manual                                                     GZEXE(1)

NAME
gzexe - compress executable files in place SYNOPSIS
gzexe name ... DESCRIPTION
The gzexe utility allows you to compress executables in place and have them automatically uncompress and execute when you run them (at a penalty in performance). For example if you execute ``gzexe /usr/bin/gdb'' it will create the following two files: -rwxr-xr-x 1 root root 1026675 Jun 7 13:53 /usr/bin/gdb -rwxr-xr-x 1 root root 2304524 May 30 13:02 /usr/bin/gdb~ /usr/bin/gdb~ is the original file and /usr/bin/gdb is the self-uncompressing executable file. You can remove /usr/bin/gdb~ once you are sure that /usr/bin/gdb works properly. This utility is most useful on systems with very small disks. OPTIONS
-d Decompress the given executables instead of compressing them. SEE ALSO
gzip(1), znew(1), zmore(1), zcmp(1), zforce(1) CAVEATS
The compressed executable is a shell script. This may create some security holes. In particular, the compressed executable relies on the PATH environment variable to find gzip and some standard utilities (basename, chmod, ln, mkdir, mktemp, rm, sleep, and tail). BUGS
gzexe attempts to retain the original file attributes on the compressed executable, but you may have to fix them manually in some cases, using chmod or chown. GZEXE(1)
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