07-02-2012
Hi Jayan Jay,
Thank you very much for your reply.
Firstly I would like to apologize about my unclear example. Actually I have a big dataset which I need to extract lines with specific words from the 3rd column which is "abc1.1" from this example together with 2 lines above and 2 lines below. This pattern will loop for the whole dataset.
Is there any possibility?
Thank you very much in advance.
Best wishes,
Amanda
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
hi,
how would i extract a range of lines in a file by using the line number? ex: file contains:
1 title
2 i want
3 this part
4 to be taken out
5 from this file
6 and sent to
7 another file
8 not needed
9 end of file
In this case, i want to copy line number 2 to 7 on a new... (2 Replies)
Discussion started by: apalex
2 Replies
2. Shell Programming and Scripting
Hi all,
I need help in doing this scenario. I have two files with multiple lines. I want to compare these two files but ignoring the lines which have words like Tran, Loc, Addr, Charge. Also if i have a word Credit in line, i want to tokenize (i.e string after character "
... (2 Replies)
Discussion started by: jakSun8
2 Replies
3. UNIX for Dummies Questions & Answers
Hello,
I have a very large text file with about 2 million lines.
Each of the lines starts like..
SNP_12345678 A 1212, 121, 343, ...
SNP_12345678 B 4567, 567, 454, ...
and so on.
I want to extract specific SNPs and plot them by GNUplot or excel.
The file is too large to be opened by text... (1 Reply)
Discussion started by: genehunter
1 Replies
4. Shell Programming and Scripting
I hava a file with following data:
number|CREDIT_ID|NULL
date|SYS_CREATION_DATE|NULL
varchar2|GGS_COMMIT_CHAR|NULL
varchar2|GGS_OP_TYPE|NULL
number|GGS_SCN|NULL|
number|GGS_LOG_SEQ|NULL
number|GGS_LOG_POS|NULL
number|GGS_ORACREC_SCN|NULL
varchar2|BATCH_ID|NULL
char|GGS_IMAGE_TYPE|NULL
... (6 Replies)
Discussion started by: kolesunil
6 Replies
5. Shell Programming and Scripting
Hi,
I have a file which contains DDL statements- CREATE TABLE, CREATE INDEX, ALTER TABLE etc.
I have to only pick CREATE TABLE statements from the file-
Source :
----------------------------------------------
--DDL for table abc
--------------------------------------------
CREATE TABLE... (4 Replies)
Discussion started by: newb
4 Replies
6. UNIX Desktop Questions & Answers
well, i am so not familiar with this kind of things but i am gonna explain extactly what i am looking for so hopfully someone can figure it out :)
i have a command that shows memory usage besides the process name, for example(the command output):
500 kb process_1
600 kb process_2
700 kb... (4 Replies)
Discussion started by: Portabello
4 Replies
7. Shell Programming and Scripting
Hi,
Please have a look on below records.
STG_HCM_STATE_DIS_TAX_TBL.1207.Xfm: The value of the row is: EMPLID = 220677 COMPANY = 919 BALANCE_ID = 0 BALANCE_YEAR = 2012
STG_HCM_STATE_DIS_TAX_TBL.1207.Xfm: ORA-00001: unique constraint (SYSADM.PS_TAX_BALANCE) violated
... (4 Replies)
Discussion started by: Sachin Lakka
4 Replies
8. Shell Programming and Scripting
Hi there,
I need a help with extracting data from tab delimited file which look like this
#CHROM POS ID REF ALT Human Cow Dog Mouse Lizard
chr2 3033 . G C 0/0 0/0 0/0 1/1 0/0
chr3 35040 . G T 0/0 0/0 ./. 1/1 0/1
chr4 60584 . T G 1/1 1/1 0/1 1/1 0/0
chr10 7147815 . G A 0/0 1/1 0/0 0/0... (9 Replies)
Discussion started by: houkto
9 Replies
9. Shell Programming and Scripting
Data file example
I look for primary and * to isolate the interesting slot number.
slot=`sed '/^primary$/,/\*/!d' filename | tail -1 | sed s'/*//' | awk '{print $1" "$2}'`
Now I want to get the Touch line for only the associate slot number, in this case, because the asterisk... (2 Replies)
Discussion started by: popeye
2 Replies
10. Shell Programming and Scripting
I have a folder containing text files. I need to extract specific lines from the files of this folder based on another file input.txt. How can I do this with awk/sed?
file1
ARG 81.9 8 81.9 0
LEU 27.1 9 27.1 0
PHE .0 10 .0 0
ASP 59.8 11 59.8 0
ASN 27.6 12 27.6 0
ALA .0 13 .0 0... (5 Replies)
Discussion started by: alanmathew84
5 Replies
LEARN ABOUT DEBIAN
h5fromh4
H5FROMH4(1) h5utils H5FROMH4(1)
NAME
h5fromh4 - convert HDF4 scientific datasets to an HDF5 file
SYNOPSIS
h5fromh4 [OPTION]... [HDF4FILE]...
DESCRIPTION
h5fromh4 takes one or more files in HDF4 format and outputs files in HDF5 format containing the datasets from the HDF4 files. (Currently,
only a single dataset per HDF4 file is converted.)
HDF4 and HDF5 are free, portable binary formats and supporting libraries developed by the National Center for Supercomputing Applications
at the University of Illinois in Urbana-Champaign.
A single h5 file can contain multiple data sets; by default, h5fromh4 creates a dataset called "data", but this can be changed via the -d
option, or by using the syntax HDF5FILE:DATASET with the -o option. The -a option can be used to append new datasets to an existing HDF5
file. If the -o option is used and multiple HDF4 files are specified, all the HDF4 datasets are output into that HDF5 file with the input
filenames (minus the ".hdf" suffix) used as the dataset names.
The most basic usage is something like 'h5fromh4 foo.hdf', which will output a file foo.h5 containing the scientific dataset from foo.hdf.
OPTIONS
-h Display help on the command-line options and usage.
-V Print the version number and copyright info for h5fromh4.
-v Verbose output.
-a If the HDF5 output file already exists, append the data as a new dataset rather than overwriting the file (the default behavior).
An existing dataset of the same name within the file is overwritten, however.
-o file
Send HDF5 output to file rather than to the input filename with .hdf replaced with .h5 (the default). If multiple input files were
specified, this causes all input datasets to be stored in file (rather than in separate files), with the input filenames (minus the
.hdf suffix) as the dataset names.
-d name
Write to dataset name in the output; otherwise, the output dataset is called "data" by default. Alternatively, use the syntax
HDF5FILE:DATASET with the -o option.
BUGS
Send bug reports to S. G. Johnson, stevenj@alum.mit.edu.
AUTHORS
Written by Steven G. Johnson. Copyright (c) 2005 by the Massachusetts Institute of Technology.
h5utils March 9, 2002 H5FROMH4(1)