Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Creating a shortcut
Top Forums Shell Programming and Scripting Creating a shortcut Post 302663689 by kylle345 on Thursday 28th of June 2012 11:15:32 AM
Old 06-28-2012
Hi thanks for replying. Yes that definitely works and I am slowly getting to the final stage.

Here is the new code that I have. Yet again there are still problems but I think a minor tweek from you experts can solve it.

Code:
awk 'NR==FNR{a[$1];next}($1 in a){print}' 1st.txt *filmatch.txt | awk '{ M=NF; for(N=4; N<=NF; N++) T[N]+=$N } END {printf("%f", T[4]/NR);for(N=5; N<=M; N++) printf("\t%f", T[N]/NR);printf("\n");}' > output.txt

What the above currently does is match all files based on 1st.txt and puts them into ONE output file. *filmatch.txt is made up of numerous files (2.txt, 3.txt, 4.txt etc.) and I want to include their name in the final file.

right now the current output looks like this (basically just the values that I want averaged):

Code:
0.068808	0.067252	0.068956	0.068141	0.068563	0.069272	0.070322	0.070029	0.069015	0.071708	0.071292	0.069931	0.071829	0.070628	0.069996	0.071036	0.070910	0.071590

But I want it to look like this:

Code:
1st.txt 0.068808	0.067252	0.068956	0.068141	0.068563	0.069272	0.070322	0.070029	0.069015	0.071708	0.071292	0.069931	0.071829	0.070628	0.069996	0.071036	0.070910	0.071590

2nd.txt 0.068808	0.067252	0.068956	0.068141	0.068563	0.069272	0.070322	0.070029	0.069015	0.071708	0.071292	0.069931	0.071829	0.070628	0.069996	0.071036	0.070910	0.071590

etc...

If you can get this to work then it would be great.

Thanks
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Creating a Shortcut in a User Driectory

Can someone tell me how to create a shortcut within a users home directory to point to another location? P.S- And is shortcut the correct terminology? Thank you! (4 Replies)
Discussion started by: bachagalou
4 Replies

2. UNIX for Dummies Questions & Answers

shortcut in unix?

Sorry, anybody here knows how to make a shortcut in unix? Thanks. Sebastian. (4 Replies)
Discussion started by: seba
4 Replies

3. UNIX for Dummies Questions & Answers

Shortcut to home directory?

Also, Wherever you are exploring files in the UNIX structure you can jusy type "cd". This will take you to your home directory. Hope that helps. Cheers! (4 Replies)
Discussion started by: guest100
4 Replies

4. UNIX for Dummies Questions & Answers

Shortcut

Dear Friends How i make shortcut in Tru64 unix for example make a shortcut for mail , i want to make a shortcut under / root the bath for mail # cd /var/spool/mail Regards, (1 Reply)
Discussion started by: fmmq
1 Replies

5. UNIX for Dummies Questions & Answers

Shortcut thing?

Hey, im new to Linux...totally new. I know there is a way to assign a type of variable or something to a directory, so instead of having to type "cd /var/www" etc, I could just assign a variable to the directory, so I could just do "cd $assignedvar" and it would be there...if you get what I... (0 Replies)
Discussion started by: mo0ness
0 Replies

6. Shell Programming and Scripting

Is there a shortcut in awk?

Is there a key board shortcut in vi editor to allow me to find the next ( or { that are corresponding to the first one? Thanks! It's % sign. (1 Reply)
Discussion started by: whatisthis
1 Replies

7. UNIX for Dummies Questions & Answers

Comparison operators: shortcut name

There are a number of comparison operators used in scripting and programming languages, such as the following: =, ==, ===, !=, =~, <, >, <=, >=, etc Is there a shortcut name for them, such as one has for as being any capital letter? If not, it would mean that I would have to list them all for a... (2 Replies)
Discussion started by: figaro
2 Replies

8. Shell Programming and Scripting

Creating a Shortcut (to just type "l" but it runs "ls -lah")

How do I create shortcuts? For example: I just want to type one key "l" and have it output the command of "ls -lah" I believe it's creating a file called l with 755 permissions but I'm not sure where to put the file. *if it matters, I'm on a shared hosting web server using cPanel with... (2 Replies)
Discussion started by: ijustsawmars
2 Replies

9. UNIX for Dummies Questions & Answers

Shortcut keys are not working

Hi all, I use the shortcut keys CTRL-a and CTRL-e to move cursor to start and end of line in shell prompt alot. But recently what happened to my system i don't know only CTRL-a is working not CTRL-e . If i press CTRL-e any other window in that desktop pop's up. Can any1 tell me how to correct... (2 Replies)
Discussion started by: vio719
2 Replies

10. Solaris

How to create a shortcut for Openoffice?

Hello all, I am facing some problem after installing the Openoffice in Solaris 10. The installation is successful but i cannot find any icon or shortcut on both Application and Desktop... please help me on this.... (8 Replies)
Discussion started by: aungyepaing
8 Replies

LEARN ABOUT DEBIAN

fastx_quality_stats

FASTX_QUALITY_STATS(1)						   User Commands					    FASTX_QUALITY_STATS(1)

NAME

       fastx_quality_stats - FASTX Statistics

DESCRIPTION

       usage: fastx_quality_stats [-h] [-N] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu)

	      [-h]  =  This  helpful help screen.  [-i INFILE]	= FASTQ input file. default is STDIN.  [-o OUTFILE] = TEXT output file. default is
	      STDOUT.  [-N]	    = New output format (with more information per nucleotide/cycle).

   The *OLD* output TEXT file will have the following fields (one row per column):
       column = column number (1 to 36 for a 36-cycles read solexa file)

       count  = number of bases found in this column.

       min    = Lowest quality score value found in this column.

       max    = Highest quality score value found in this column.

       sum    = Sum of quality score values for this column.

       mean   = Mean quality score value for this column.

       Q1     = 1st quartile quality score.

       med    = Median quality score.

       Q3     = 3rd quartile quality score.

       IQR    = Inter-Quartile range (Q3-Q1).

       lW     = 'Left-Whisker' value (for boxplotting).

       rW     = 'Right-Whisker' value (for boxplotting).

	      A_Count = Count of 'A' nucleotides found in this column.	C_Count = Count of 'C' nucleotides found in this column.  G_Count =  Count
	      of  'G'  nucleotides found in this column.  T_Count = Count of 'T' nucleotides found in this column.  N_Count = Count of 'N' nucleo-
	      tides found in this column.  max-count = max. number of bases (in all cycles)

   The *NEW* output format:
	      cycle (previously called 'column') = cycle number max-count For each nucleotide in the cycle (ALL/A/C/G/T/N):

       count  = number of bases found in this column.

       min    = Lowest quality score value found in this column.

       max    = Highest quality score value found in this column.

       sum    = Sum of quality score values for this column.

       mean   = Mean quality score value for this column.

       Q1     = 1st quartile quality score.

       med    = Median quality score.

       Q3     = 3rd quartile quality score.

       IQR    = Inter-Quartile range (Q3-Q1).

       lW     = 'Left-Whisker' value (for boxplotting).

       rW     = 'Right-Whisker' value (for boxplotting).

SEE ALSO

       The quality of this automatically generated manpage might be insufficient.  It is suggested to visit

	      http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.

fastx_quality_stats 0.0.13.2					     May 2012						    FASTX_QUALITY_STATS(1)
All times are GMT -4. The time now is 08:53 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy