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UNIX for Dummies Questions & Answers
How to change sequence name in along fasta file?
Post 302663225 by bartus11 on Wednesday 27th of June 2012 05:51:08 PM
06-27-2012
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GGTTCTCTTC
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LEARN ABOUT DEBIAN
sim2gff
SIM2GFF(1) General Commands Manual SIM2GFF(1) NAME
sim2gff - Converts SIM file into GFF formatted records SYNOPSIS
sim2gff [-frxyHh] sim_file > gff_file DESCRIPTION
This manual page documents briefly the sim2gff command. sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot). OPTIONS
-h, --help Show summary of options. -f Output is written to a file named <sim_file>.gff. -r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis). -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -H Use the fasta file headers for species labels. EXIT STATUS
The following perl-like exit status are returned: 0 Error 1 Successful completion SEE ALSO
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1). AUTHOR
sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>. This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 SIM2GFF(1)