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UNIX for Dummies Questions & Answers
How to change sequence name in along fasta file?
Post 302663215 by baika on Wednesday 27th of June 2012 05:31:24 PM
06-27-2012
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> fefrwefrwef X900
AGAGGGAATTGG
AGGGGCCTGGAG
GGTTCTCTTC
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AGAGGGAATTGG
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GGTTCTCTTC
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LEARN ABOUT DEBIAN
ali2gff
ALI2GFF(1) General Commands Manual ALI2GFF(1) NAME
ali2gff - Module to translate a MUMmer output files into gff formatted output. SYNOPSIS
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file> OPTIONS
-h, --help Show summary of options. -r Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis). -t <.|0|1|2> Put label 'frame' in gff output. -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -i Ignore full sequence identities. -f Write output to file. SEE ALSO
blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1). AUTHOR
ali2gff was written by Steffi Gebauer-Jung. This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 ALI2GFF(1)