I guess you didn't like the answers there? At any rate, you still haven't said what system/shell you are using. Your code worked for me on ksh on Solaris but I think theres a more effecienct way to accomplish this. What is "grep ." supposed to do (I guess remove blank lines)?:
Can I create a function to return non-interger value in shell script?
for example,
function getcommand ()
{
echo "read command"
read command
echo $command
}
command=$(getcommand)
I tried to do something as above. The statement echo "read command" does not show up.
... (5 Replies)
Hi All
I have written code for storing data in a string based on pattern.
whenever i tried to use in a function call its not getting there.
Actually the same logic was applied for another string..then i can use the
string at any function.
the code goes like this
/mp metadata/{... (1 Reply)
Hi all,
I have a variable say var1 (output from somewhere, which I can't change)which store something like this:
echo $var1
name=fred
age=25
address="123 abc"
password=pass1234
how can I make the variable $name, $age, $address and $password contain the info?
I mean do this in a... (1 Reply)
Hi
I have a small function which returns a wrong value.
The function tries to make a connection to oracle database and tries to get the open_mode of the database in the variable status.
However when a database is down the value of the status column is set to READWRITE i am not sure why.
I... (0 Replies)
Sometimes I observe this in gdb:
(gdb) br my_function
Breakpoint .. at 0x...: file ..., line ...
i.e., "my_function" does exist in the current executable.
however, dlsym does not find it:
(gdb) p dlsym(0,"my_function")
$6 = 0
This is a C program; dlsym does find other defined functions and... (2 Replies)
I get an error when I grep my results into a variable when the grep finds more than one file.
FND="$(find ediout* -mmin -60)"
if ; then
STR="$(find ediout* -mmin -60 -exec grep -l "ERRORS Encountered" {} +)"
fi
When there is only one ediout file it works fine. How do I... (11 Replies)
can anyone please help me with this:
i have written a shell script and a stored procedure which has one OUT parameter. now i want to use that out parameter as an input to the unix script but i am getting an error as variable not found. below are the unix scripts and stored procedure...
... (4 Replies)
I am trying to generate some scripts to help manage an Oracle database. When I check the value returned from Oracle it has a leading carriage return in the variable. Is there a way to prevent this? Is there a way to easily strip out the carriage return. See code and output below.
... (7 Replies)
Hi,
I need to return a value from the function. the value will be the output from cat command which uses random fucntion.
#!/bin/ksh
hello()
{
var1=$(`cat /dev/urandom| tr -dc 'a-zA-Z0-9-!%&()*+,-/:;<=>?_'|fold -w 10 | head -n 1`)
echo "value is" var1
return var1
}
hello
var=$?... (2 Replies)
I'm having a little trouble returning a value from a function or calling it, I'm not quite sure.
I'm calling the function here
function region_lookup_with_details {
results = $(set_region)
echo $results
}
This is the function I'm calling
function set_region {
... (8 Replies)
Discussion started by: akechnie
8 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)