06-27-2012
-i means "in place" But. It requires that the original file be removed and 1 is stdout to perl.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello,
Consider that i have many files that have the below format:
file1
900 7777
1000 5 6 23 nnnnnnnnnnnnnnnnnn
1100 kkkkkkk
file2
900 1989
1000 5 3 10 kkkdfdfdffd
1100 kkkkkkk
What i would like to do is on every file to search the line that starts with... (4 Replies)
Discussion started by: chriss_58
4 Replies
2. Shell Programming and Scripting
Hi
I am trying to search and replace a multi line pattern in a php file using awk.
The pattern starts with
<div id="navbar">
and ends with
</div>
and spans over an unknown number of lines.
I need the command to be a one liner.
I use the "record separator" like this :
awk -v... (8 Replies)
Discussion started by: louisJ
8 Replies
3. Shell Programming and Scripting
Thanks for giving your time and effort to answer questions and helping newbies like me understand awk.
I have a huge file, millions of lines, so perl takes quite a bit of time, I'd like to convert these perl one liners to awk.
Basically I'd like all lines with ISA sandwiched between... (9 Replies)
Discussion started by: verge
9 Replies
4. Shell Programming and Scripting
Hi there
I just wondered if someone could give me some perl advice
I have a bunch of text files used for a wiki that have common headings such as
---++ Title
blah
---++ Summary
blah
---++ Details
Here is the multiline
block
of text I
wish
to (6 Replies)
Discussion started by: rethink
6 Replies
5. Shell Programming and Scripting
hello,
I want to replace awk with a perl one liner in unix.
i use in awk REGEX and FS ( field separator) because
awk syntaxes in different unix os versions have not the same behaviour.
Awk, Nawk and GNU Awk Cheat Sheet - good coders code, great reuse
i have a file named "file" and want... (5 Replies)
Discussion started by: bora99
5 Replies
6. Shell Programming and Scripting
Hi Folks,
I have an html file which contains the below line in the body tagI am trying the replace hello with Hello Giridhar programatically.
<body>
<P><STRONG><FONT face="comic sans ms,cursive,sans-serif"><EM>Hello</EM></FONT></STRONG></P>
</body>
I have written the below code to... (3 Replies)
Discussion started by: giridhar276
3 Replies
7. Shell Programming and Scripting
Hi,
I am looking for assistance over shell or perl (without XML twig module) which replace string in XML file under particular branch..example of code file sample..
Exact requirment : Replace "Su saldo es" in below file with "Your balance" but only in XML branch of Text id=98 and Text Id=12... (7 Replies)
Discussion started by: Ashu_099
7 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I am a newbie to awk. Here is my problem. Looking for an awk 1-liner to solve it:
My Computing Environment:
- Solaris10
- I prefer to use csh or sh shells
1. Lets say my input file is File1.dat (delimter = | ) and looks as follows:
(File1.dat)
... (1 Reply)
Discussion started by: andy b
1 Replies
9. Shell Programming and Scripting
hi,
I am using PERL one liner for oracle database connection as :
$PERL -e "use DBI; DBI->connect(qw(DBI:Oracle:SID user passwd));"
is there a way to append select statement to this connection ? i.e. DB connection and select stmt in one line ?
how to do sysdba connection using one lines... (1 Reply)
Discussion started by: talashil
1 Replies
10. Shell Programming and Scripting
Hi all,
What I would like to achieve is to batch change the code below in every pdf in a given directory (each pdf is uncompressed so that can be easily edited).
An example of the javascript code:
if (this.hostContainer) { try { this.hostContainer.postMessage(pp_216', 15259]);... (3 Replies)
Discussion started by: menteith
3 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)
NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)