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Full Discussion: copy script
Top Forums Shell Programming and Scripting copy script Post 302661853 by LMHmedchem on Monday 25th of June 2012 10:44:35 PM
Old 06-25-2012
copy script
I have a little copy script,
Code:
#! /usr/bin/bash

FILE_COPY_LIST=$1
SOURCE_DIRECTORY=$2
DESTINATION_DIRECTORY=$3

while read file
do
   if [ ! -f $SOURCE_DIRECTORY'/'$file ]; then
      echo $file "  cannot be found"
   fi
   cp -f $SOURCE_DIRECTORY'/'$file  $DESTINATION_DIRECTORY
done < $FILE_COPY_LIST

This just accepts a file with a list of file names, source directory, and destination directory. This works fine for simple applications, but I would like to use a specific column in a multi column file as the file list.
Code:
id	file_name	IDNUMBER	data
1	ST4125183.txt	ST4125183	151231
2	ST4045313.txt	ST4045313	162214
3	ST4107613.txt	ST4107613	205239
4	ST4144567.txt	ST4144567	252357
5	ST090750.txt	ST090750	280367

and pass the column header as in argument,

copy.sh file_with_list file_name src_dir/ dest_dir/

This would save allot of time, but I'm not sure how to go about it.

Any advice would be appreciated,

LMHmedchem
 

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