Sponsored Content
Top Forums Shell Programming and Scripting How to avoid Delimiter occuring in column values in .csv file Post 302661427 by Sheel on Monday 25th of June 2012 09:04:33 AM
Old 06-25-2012
It worked fine for me. See if there are syntactical errors in your file. Here is the script you might be looking for :

Script - read.ksh
Code:
# STEP 1 - Replace the commas within double quotes with pipe & write it to a temp file
awk -F'"' 'BEGIN{OFS="\""}{gsub(",","|",$2);print}' inputFile.csv > tempFile.csv
 
# STEP 2 - Get the first and last columns from temp file
while read line
do
        firstColumn=`echo $line|awk -F"," '{print $1}'`
        echo "First Column= $firstColumn"
        lastColumn=`echo $line|awk -F"," '{print $NF}'`
        echo "Last Column= $lastColumn"
 
# STEP 3 - Replace pipe with comma
 finalLastColumn=`echo $lastColumn | sed 's/\|/\,/g'`
 echo "Finally Last Column= $finalLastColumn"
done < tempFile.csv

inputFile.csv
Code:
"asdf, tew,123",abcd,123456
abcd,"asdf, tew,123",123456
abcd,1234,"asdf, tew,123"

Test Output
Code:
./read.ksh
First Column= "asdf| tew|123"
Last Column= 123456
Finally Last Column= 123456
First Column= abcd
Last Column= 123456
Finally Last Column= 123456
First Column= abcd
Last Column= "asdf| tew|123"
Finally Last Column= "asdf, tew,123"

Missed reverting pipe to comma in first column. You can add these lines after step 3
Code:
finalFirstColumn=`echo $firstColumn | sed 's/\|/\,/g'`
 echo "Finally first Column= $finalFirstColumn"


Last edited by Sheel; 06-25-2012 at 10:12 AM..
 

9 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

return a list of unique values of a column from csv format file

Hi all, I have a huge csv file with the following format of data, Num SNPs, 549997 Total SNPs,555352 Num Samples, 157 SNP, SampleID, Allele1, Allele2 A001,AB1,A,A A002,AB1,A,A A003,AB1,A,A ... ... ... I would like to write out a list of unique SNP (column 1). Could you... (3 Replies)
Discussion started by: phoeberunner
3 Replies

2. Shell Programming and Scripting

Check to identify duplicate values at first column in csv file

Hello experts, I have a requirement where I have to implement two checks on a csv file: 1. Check to see if the value in first column is duplicate, if any value is duplicate script should exit. 2. Check to verify if the value at second column is between "yes" or "no", if it is anything else... (4 Replies)
Discussion started by: avikaljain
4 Replies

3. Shell Programming and Scripting

How to delete a column/columns of a CSV file which has cell values with a string enclosed in " , "?

How can I delete a column from a CSV file which has comma separated value with a string enclosed in double quotes and a comma in between? I have a file 44.csv with 4 lines including the header like the below format: column1, column2, column3, column 4, column5, column6 12,455,"string with... (6 Replies)
Discussion started by: dhruuv369
6 Replies

4. Shell Programming and Scripting

Script for extracting data from csv file based on column values.

Hi all, I am new to shell script.I need your help to write a shell script. I need to write a shell script to extract data from a .csv file where columns are ',' separated. The file has 5 columns having values say column 1,column 2.....column 5 as below along with their valuesm.... (3 Replies)
Discussion started by: Vivekit82
3 Replies

5. Linux

Filter a .CSV file based on the 5th column values

I have a .CSV file with the below format: "column 1","column 2","column 3","column 4","column 5","column 6","column 7","column 8","column 9","column 10 "12310","42324564756","a simple string with a , comma","string with or, without commas","string 1","USD","12","70%","08/01/2013",""... (2 Replies)
Discussion started by: dhruuv369
2 Replies

6. Shell Programming and Scripting

Fetching values in CSV file based on column name

input.csv: Field1,Field2,Field3,Field4,Field4 abc ,123 ,xyz ,000 ,pqr mno ,123 ,dfr ,111 ,bbb output: Field2,Field4 123 ,000 123 ,111 how to fetch the values of Field4 where Field2='123' I don't want to fetch the values based on column position. Instead want to... (10 Replies)
Discussion started by: bharathbangalor
10 Replies

7. Shell Programming and Scripting

Remove the values from a certain column without deleting the Column name in a .CSV file

(14 Replies)
Discussion started by: dhruuv369
14 Replies

8. Linux

To get all the columns in a CSV file based on unique values of particular column

cat sample.csv ID,Name,no 1,AAA,1 2,BBB,1 3,AAA,1 4,BBB,1 cut -d',' -f2 sample.csv | sort | uniq this gives only the 2nd column values Name AAA BBB How to I get all the columns of CSV along with this? (1 Reply)
Discussion started by: sanvel
1 Replies

9. Shell Programming and Scripting

Identify duplicate values at first column in csv file

Input 1,ABCD,no 2,system,yes 3,ABCD,yes 4,XYZ,no 5,XYZ,yes 6,pc,noCode used to find duplicate with regard to 2nd column awk 'NR == 1 {p=$2; next} p == $2 { print "Line" NR "$2 is duplicated"} {p=$2}' FS="," ./input.csv Now is there a wise way to de-duplicate the entire line (remove... (4 Replies)
Discussion started by: deadyetagain
4 Replies
csv(n)								  CSV processing							    csv(n)

NAME
csv - Procedures to handle CSV data. SYNOPSIS
package require Tcl 8.3 package require csv ?0.3? ::csv::join values {sepChar ,} ::csv::joinlist values {sepChar ,} ::csv::read2matrix chan m {sepChar ,} {expand none} ::csv::read2queue chan q {sepChar ,} ::csv::report cmd matrix ?chan? ::csv::split line {sepChar ,} ::csv::split2matrix m line {sepChar ,} {expand none} ::csv::split2queue q line {sepChar ,} ::csv::writematrix m chan {sepChar ,} ::csv::writequeue q chan {sepChar ,} DESCRIPTION
The csv package provides commands to manipulate information in CSV FORMAT (CSV = Comma Separated Values). COMMANDS
The following commands are available: ::csv::join values {sepChar ,} Takes a list of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". ::csv::joinlist values {sepChar ,} Takes a list of lists of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". Each element of the outer list is considered a record, these are separated by newlines in the result. The elements of each record are formatted as usual (via ::csv::join). ::csv::read2matrix chan m {sepChar ,} {expand none} A wrapper around ::csv::split2matrix (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given matrix. For an explanation of the expand argument see ::csv::split2matrix. ::csv::read2queue chan q {sepChar ,} A wrapper around ::csv::split2queue (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given queue. ::csv::report cmd matrix ?chan? A report command which can be used by the matrix methods format 2string and format 2chan. For the latter this command delegates the work to ::csv::writematrix. cmd is expected to be either printmatrix or printmatrix2channel. The channel argument, chan, has to be present for the latter and must not be present for the first. ::csv::split line {sepChar ,} converts a line in CSV format into a list of the values contained in the line. The character used to separate the values from each other can be defined by the caller, via sepChar, but this is optional. The default is ",". ::csv::split2matrix m line {sepChar ,} {expand none} The same as ::csv::split, but appends the resulting list as a new row to the matrix m, using the method add row. The expansion mode specified via expand determines how the command handles a matrix with less columns than contained in line. The allowed modes are: none This is the default mode. In this mode it is the responsibility of the caller to ensure that the matrix has enough columns to contain the full line. If there are not enough columns the list of values is silently truncated at the end to fit. empty In this mode the command expands an empty matrix to hold all columns of the specified line, but goes no further. The overall effect is that the first of a series of lines determines the number of columns in the matrix and all following lines are truncated to that size, as if mode none was set. auto In this mode the command expands the matrix as needed to hold all columns contained in line. The overall effect is that after adding a series of lines the matrix will have enough columns to hold all columns of the longest line encountered so far. ::csv::split2queue q line {sepChar ,} The same as ::csv::split, but appending the resulting list as a single item to the queue q, using the method put. ::csv::writematrix m chan {sepChar ,} A wrapper around ::csv::join taking all rows in the matrix m and writing them CSV formatted into the channel chan. ::csv::writequeue q chan {sepChar ,} A wrapper around ::csv::join taking all items in the queue q (assumes that they are lists) and writing them CSV formatted into the channel chan. FORMAT
Each record of a csv file (comma-separated values, as exported e.g. by Excel) is a set of ASCII values separated by ",". For other lan- guages it may be ";" however, although this is not important for this case (The functions provided here allow any separator character). If a value contains itself the separator ",", then it (the value) is put between "". If a value contains ", it is replaced by "". EXAMPLE
The record 123,"123,521.2","Mary says ""Hello, I am Mary""" is parsed as follows: a) 123 b) 123,521.2 c) Mary says "Hello, I am Mary" SEE ALSO
matrix, queue KEYWORDS
csv, matrix, queue, package, tcllib csv 0.3 csv(n)
All times are GMT -4. The time now is 06:49 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy