Hello everyone,
I am trying to do a simple script (shell or perl) for a bioinformatic problem, where I want to use a list from file2 and append this information to file1 (output).
Example: File1 File2
Ouput (new File1)
If anyone has any feedback that would be greatly appreciated.
Cheers
herasj
Last edited by Scrutinizer; 06-21-2012 at 05:49 PM..
Reason: code tags
Hi all,
I have a script that scan files, find old templet and replace it with new one.
#!/bin/ksh
file_name=$1
old_templet=$2
new_templet=$3
# Loop through every file like this
for file in file_name
do
cat $file | sed "s/old_templet/new_templet/g" > $file.new
#do a global searce and... (8 Replies)
hi guys,
Suppose you have 100 files in a folder and you want to replace all occurances of a word say "ABCD" in those files with "DCBA", how would you do
it ???
jatin (13 Replies)
I used the following script
cd pathname
for y in `ls *`;
do sed "s/ABCD/DCBA/g" $y > temp; mv temp $y;
done
and it worked fine for finding and replacing strings with names etc. in all files of the given path.
I'm trying to replace a string which consists of path (location of file)
... (11 Replies)
Hi all
im having trouble starting with a shell script, i hope someone here can help me
i have 2 files
file1:
404905.jpg 516167
404906.jpg 516168
404917.psd 516183
404947.pdf 516250
file2:
516250 /tmp/RecyclePoster18241.pdf
516167 /tmp/ReunionCardFINAL.jpg
516168... (7 Replies)
Hi All,
I need to write a script that will go through 600+ files and perform find and replace. I was going to use sed but there is a level of complexity that is doing my head in.
To explain: I have 600+ files that have a line in them that reads (for example)
FILE=DCLCLHST... (4 Replies)
Dear all
I need a script for multiple find and replace in a single file.
For example input file is -
qwe wer ert rty tyu
asd sdf dgf dfg fgh
qwe wer det rtyyui
jhkj ert asd asd dfgd
now
qwe should be replace with aaaaaa
asd should be replace with bbbbbbbb
rty should be replace... (6 Replies)
Hello Folks,
#!/usr/bin/perl
use File::Find;
open F,shift or die $!;
my %ip=map/(\S+)\s+(\S+)/,<F>;
close F;
find sub{
if( -f ){
local @ARGV=($_);
local $^I="";
while( <> ){
!/#/ && s/(\w+)\.fs\.rich\.us/$ip{$1}/g;
print;
}
}... (8 Replies)
Hey Guys, im looking for a script that will work under OSX.
What i want to do is copy information from one file (Specific LIne) and write it to a certain line in another. To be more specific...
I want the hostname of a mac to be gathered ( i assume its stored in a .plist file somewhere) and... (2 Replies)
Hi all
This is my first post. Please bear with me with all my mistakes. I started learning shell since couple of days now and this might be quite basic for all, i want to search for files in a directory containing specific string and replace it with new string. The code i wrote is quite bulky... (2 Replies)
Friends,
I have more than 1000 lines in text file which needs to be converted as UPPERCASE by adding _
com.sun.url=www.sun.com
com.ssl.port=808
com.ui.path=/apps/ssi
Expected output
com.sun.url=_COM.SUN.URL_
com.ssl.port=_COM.SSL.PORT_
com.ui.path=_COM.UI.PATH_
Thanks in... (4 Replies)
Discussion started by: baluchen
4 Replies
LEARN ABOUT DEBIAN
urifind
URIFIND(1p) User Contributed Perl Documentation URIFIND(1p)NAME
urifind - find URIs in a document and dump them to STDOUT.
SYNOPSIS
$ urifind file
DESCRIPTION
urifind is a simple script that finds URIs in one or more files (using "URI::Find"), and outputs them to to STDOUT. That's it.
To find all the URIs in file1, use:
$ urifind file1
To find the URIs in multiple files, simply list them as arguments:
$ urifind file1 file2 file3
urifind will read from "STDIN" if no files are given or if a filename of "-" is specified:
$ wget http://www.boston.com/ -O - | urifind
When multiple files are listed, urifind prefixes each found URI with the file from which it came:
$ urifind file1 file2
file1: http://www.boston.com/index.html
file2: http://use.perl.org/
This can be turned on for single files with the "-p" ("prefix") switch:
$urifind -p file3
file1: http://fsck.com/rt/
It can also be turned off for multiple files with the "-n" ("no prefix") switch:
$ urifind -n file1 file2
http://www.boston.com/index.html
http://use.perl.org/
By default, URIs will be displayed in the order found; to sort them ascii-betically, use the "-s" ("sort") option. To reverse sort them,
use the "-r" ("reverse") flag ("-r" implies "-s").
$ urifind -s file1 file2
http://use.perl.org/
http://www.boston.com/index.html
mailto:webmaster@boston.com
$ urifind -r file1 file2
mailto:webmaster@boston.com
http://www.boston.com/index.html
http://use.perl.org/
Finally, urifind supports limiting the returned URIs by scheme or by arbitrary pattern, using the "-S" option (for schemes) and the "-P"
option. Both "-S" and "-P" can be specified multiple times:
$ urifind -S mailto file1
mailto:webmaster@boston.com
$ urifind -S mailto -S http file1
mailto:webmaster@boston.com
http://www.boston.com/index.html
"-P" takes an arbitrary Perl regex. It might need to be protected from the shell:
$ urifind -P 's?html?' file1
http://www.boston.com/index.html
$ urifind -P '.org' -S http file4
http://www.gnu.org/software/wget/wget.html
Add a "-d" to have urifind dump the refexen generated from "-S" and "-P" to "STDERR". "-D" does the same but exits immediately:
$ urifind -P '.org' -S http -D
$scheme = '^(http):'
@pats = ('^(http):', '.org')
To remove duplicates from the results, use the "-u" ("unique") switch.
OPTION SUMMARY -s Sort results.
-r Reverse sort results (implies -s).
-u Return unique results only.
-n Don't include filename in output.
-p Include filename in output (0 by default, but 1 if multiple files are included on the command line).
-P $re
Print only lines matching regex '$re' (may be specified multiple times).
-S $scheme
Only this scheme (may be specified multiple times).
-h Help summary.
-v Display version and exit.
-d Dump compiled regexes for "-S" and "-P" to "STDERR".
-D Same as "-d", but exit after dumping.
AUTHOR
darren chamberlain <darren@cpan.org>
COPYRIGHT
(C) 2003 darren chamberlain
This library is free software; you may distribute it and/or modify it under the same terms as Perl itself.
SEE ALSO
URI::Find
perl v5.14.2 2012-04-08 URIFIND(1p)