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Top Forums Shell Programming and Scripting Replicating jobs, renaming outout Post 302653501 by peterjb100 on Saturday 9th of June 2012 07:58:42 AM
Old 06-09-2012
Replicating jobs, renaming outout

Can anyone tell me if it's possible to write a script that will repeat the same job several times but give the output a slightly different name each time (i.e. change or add a number at the end of the output file)? Here is the script I use to run a single job:

Code:
#!/bin/bash
#PBS -N job0
#PBS -l select=1:ncpus=1:mem=15gb
#PBS -k oe
#PBS -q workq
#PBS -l walltime=72:00:00
#PBS -M user@gmail.com
#PBS -m ea

source /etc/profile.d/modules.sh
module purge
module add gcc/4.5.1

cd $PBS_O_WORKDIR

/scratch/user/program -iprogram_0.u -oprogram_0.out

I know I can write separate bash files for each job but I want to know if I can write a script that will replicate jobs AND give the output a new name, without having to specify that all in a another bash file. Thanks.

Last edited by Scrutinizer; 06-09-2012 at 09:00 AM.. Reason: code tags
 

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proto(4)						     Kernel Interfaces Manual							  proto(4)

NAME
proto - prototype job file for at SYNOPSIS
DESCRIPTION
When a job is submitted to or the job is constructed as a POSIX shell script (see at(1)). The job file is created in as follows: o creates a header describing the job as an job or a job. jobs submitted to all queues other than queue are listed as jobs. The header is: for an job, or for a job. o A set of POSIX shell commands is added to make the environment (see environ(5)) for the job the same as the current environment. o then copies text from the prototype file to the job file, except for special variables that are replaced by other text: Replaced by the current working directory. Replaced by the current file size limit (see ulimit(2)). Replaced by the current umask (see umask(2)). Replaced by the time at which the job should be run, expressed as seconds since January 1, 1970, 00:00 Coordinated Universal Time, preceded by a colon. Replaced by text read by from the standard input (that is, the commands provided to to be run in the job). o When a job is submitted to queue queue, uses the file as the prototype file if it exists. Otherwise, it uses the file EXAMPLES
The following file creates commands to change the current directory, file size limit, and umask in the job to their respective values as they existed when was originally run. These commands are inserted before the commands in the job: SEE ALSO
at(1), queuedefs(4). STANDARDS CONFORMANCE
proto(4)
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