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Top Forums Shell Programming and Scripting Problem in perl program in printing all the entries Post 302651843 by pludi on Wednesday 6th of June 2012 08:59:10 AM
Old 06-06-2012
For readability, here's a formatted and numbered version:
Code:
  1 #!/usr/bin/perl
  2 $/ = "\n\n";
  3 open( DATA, 'mutationsonly.txt' );
  4
  5 # or die("Could not open mutationsonly file.");
  6 open( MYOUTPUT, ">newmutations.txt" );
  7
  8 # or die ("could not open newmutations file.");
  9 my @records = <DATA>;
 10 close(MYOUTPUT);
 11 close(DATA);
 12 foreach my $record (@records) {
 13     chomp;
 14     my $find = /^\*FIELD\*\sAV$/;
 15     if ( $record =~ m/ $find / ) {
 16         print "$record";
 17     }
 18 }

My guess is that in line 14 you're trying to assign a regular expression to a variable, and use that in the match below. To do that, you'd have to use the qr// construct, and it would be much more efficient to do that outside the loop, instead of each time again.

Other than that, you can probably do the same thing with a simple grep {}, eg
Code:
#!/usr/bin/perl
#$/ = "\n\n";
open( DATA, 'mutationsonly.txt' );

# or die("Could not open mutationsonly file.");
open( MYOUTPUT, ">newmutations.txt" );

# or die ("could not open newmutations file.");
my @records = <DATA>;
close(MYOUTPUT);
close(DATA);
print grep { /^\*FIELD\*\sAV$/ } @records;

 

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Perl::Critic::Policy::InputOutput::ProhibitTwoArgOpen(3)User Contributed Perl DocumentatioPerl::Critic::Policy::InputOutput::ProhibitTwoArgOpen(3)

NAME
Perl::Critic::Policy::InputOutput::ProhibitTwoArgOpen - Write "open $fh, q{<}, $filename;" instead of "open $fh, "<$filename";". AFFILIATION
This Policy is part of the core Perl::Critic distribution. DESCRIPTION
The three-argument form of "open" (introduced in Perl 5.6) prevents subtle bugs that occur when the filename starts with funny characters like '>' or '<'. The IO::File module provides a nice object-oriented interface to filehandles, which I think is more elegant anyway. open( $fh, '>output.txt' ); # not ok open( $fh, q{>}, 'output.txt' ); # ok use IO::File; my $fh = IO::File->new( 'output.txt', q{>} ); # even better! It's also more explicitly clear to define the input mode of the file, as in the difference between these two: open( $fh, 'foo.txt' ); # BAD: Reader must think what default mode is open( $fh, '<', 'foo.txt' ); # GOOD: Reader can see open mode This policy will not complain if the file explicitly states that it is compatible with a version of perl prior to 5.6 via an include statement, e.g. by having "require 5.005" in it. CONFIGURATION
This Policy is not configurable except for the standard options. NOTES
There are two cases in which you are forced to use the two-argument form of open. When re-opening STDIN, STDOUT, or STDERR, and when doing a safe pipe open, as described in perlipc. SEE ALSO
IO::Handle IO::File AUTHOR
Jeffrey Ryan Thalhammer <jeff@imaginative-software.com> COPYRIGHT
Copyright (c) 2005-2011 Imaginative Software Systems. All rights reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.3 2014-06-09 Perl::Critic::Policy::InputOutput::ProhibitTwoArgOpen(3)
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