If I understand correctly, you will want something like this:
Code:
#!/usr/bin/perl
use strict;
use warnings;
my ($index, $chr, $geno, $mutation);
my $ref = "A";
open(FILE,"<","file.txt") or die $!;
while (<FILE>) {
next unless $_ !~ /Index/;
next unless $_ =~ /^(\d*)\s*([a-z]*\d)\s*([a-z]*)\s*([a-z]*)/i;
$index = $1;
$geno = $3;
next unless $geno !~ /$ref/;
print "Genotype '" . $geno . "' (Index: " . $index . ") does not match the reference type '" . $ref . "'.\n";
}
Which will result in this:
Code:
Genotype 'TT' (Index: 1) does not match the reference type 'A'.
Genotype 'CC' (Index: 4) does not match the reference type 'A'.
Obviously, I have printed my own formatted line, however you could simply use the '$_' to leave as is ( print $_ . "\n"; ).
Hello all
im facing some kind of problem i have this string :
functionA() $" "$ functionB("arg1") $" = "$
i will like to replace all the pairs of opening and closing "$" to be something like that
functionA() <#" "#> functionB("arg1") <#" = "#>
i cant of course do is with simple ... (1 Reply)
Hi.
I have three arrays.
@a=('AB','CD','EF');
@b=('AB,'DG',HK');
@c=('DD','TT','MM');
I want to compare the elements of the first two array and if they match then so some substition.
I tried using the if statement using the scalar value of the array but its not giving me any output.
... (7 Replies)
Hi all,
I am trying to compare two arrays in perl using the following code.
foreach $item (@arrayA){
push(@arrayC, $item) unless grep(/$item/, @arrayB); ... (1 Reply)
I have a main file with variable tokens like this:
name: File1
===========
Destination/Company=@deploy.company@
Destination/Environment=@deploy.env@
Destination/Location=@deploy.location@
Destination/Domain=@deploy.location@
MIG_GatewayAddresses=@deploy.gwaddress@
MIG_URL=@deploy.mig_url@... (1 Reply)
Hi there, i have been trying different methods and i wonder if somebody could explain to me how i would perform a comparison on two arrays for example
my @array1 = ("gary" ,"peter", "paul");
my @array2 = ("gary" ,"peter", "joe");
I have two arrays above, and i want to something like this... (5 Replies)
Hi,
I'm new to perl and i have to write a perl script that will compare to log/txt files and display the differences. Unfortunately I'm not allowed to use any complied binaries or applications like diff or comm.
So far i've across a code like this:
use strict;
use warnings;
my $list1;... (2 Replies)
What do i need to do have the below perl program load 205 million record files into the hash. It currently works on smaller files, but not working on huge files. Any idea what i need to do to modify to make it work with huge files:
#!/usr/bin/perl
$ot1=$ARGV;
$ot2=$ARGV;
open(mfileot1,... (12 Replies)
I have these two file that I am trying to compare using shell arrays. I need to find out the changed or the missing
enteries from File2. For example. The line "f nsd1" in file2 is different from file1 and the line "g nsd6" is missing
from file2.
I dont want to use "for loop" because my files... (2 Replies)
Hi everyone
I have a question for you, as I am trying to learn more about Perl and work with some weather data. I have an ascii file (shown below) that has 10 lines with different columns. What I would like is have Perl find an "anomalous" value by comparing a field with the values from the last... (2 Replies)
Discussion started by: lucshi09
2 Replies
LEARN ABOUT MOJAVE
bytes5.18
bytes(3pm) Perl Programmers Reference Guide bytes(3pm)NAME
bytes - Perl pragma to force byte semantics rather than character semantics
NOTICE
This pragma reflects early attempts to incorporate Unicode into perl and has since been superseded. It breaks encapsulation (i.e. it
exposes the innards of how the perl executable currently happens to store a string), and use of this module for anything other than
debugging purposes is strongly discouraged. If you feel that the functions here within might be useful for your application, this possibly
indicates a mismatch between your mental model of Perl Unicode and the current reality. In that case, you may wish to read some of the perl
Unicode documentation: perluniintro, perlunitut, perlunifaq and perlunicode.
SYNOPSIS
use bytes;
... chr(...); # or bytes::chr
... index(...); # or bytes::index
... length(...); # or bytes::length
... ord(...); # or bytes::ord
... rindex(...); # or bytes::rindex
... substr(...); # or bytes::substr
no bytes;
DESCRIPTION
The "use bytes" pragma disables character semantics for the rest of the lexical scope in which it appears. "no bytes" can be used to
reverse the effect of "use bytes" within the current lexical scope.
Perl normally assumes character semantics in the presence of character data (i.e. data that has come from a source that has been marked as
being of a particular character encoding). When "use bytes" is in effect, the encoding is temporarily ignored, and each string is treated
as a series of bytes.
As an example, when Perl sees "$x = chr(400)", it encodes the character in UTF-8 and stores it in $x. Then it is marked as character data,
so, for instance, "length $x" returns 1. However, in the scope of the "bytes" pragma, $x is treated as a series of bytes - the bytes that
make up the UTF8 encoding - and "length $x" returns 2:
$x = chr(400);
print "Length is ", length $x, "
"; # "Length is 1"
printf "Contents are %vd
", $x; # "Contents are 400"
{
use bytes; # or "require bytes; bytes::length()"
print "Length is ", length $x, "
"; # "Length is 2"
printf "Contents are %vd
", $x; # "Contents are 198.144"
}
chr(), ord(), substr(), index() and rindex() behave similarly.
For more on the implications and differences between character semantics and byte semantics, see perluniintro and perlunicode.
LIMITATIONS
bytes::substr() does not work as an lvalue().
SEE ALSO
perluniintro, perlunicode, utf8
perl v5.18.2 2013-11-04 bytes(3pm)