Hi All,
I am trying to check if if column 5 is greater than 90. If greater it will print the term in column 6, else if all are within limit, then it will output "Size is within limit". I can't seem to do that with the below code. The output should only be 1 statement of "Size is within the... (4 Replies)
HI guys,
I have created a script to read 1 column in a csv file and then place it in text file.
However, when i checked out the text file, it is not in a column format...
Example:
CSV file contains
name,age
aa,11
bb,22
cc,33
After using awk to get first column
TXT file... (1 Reply)
Hi Experts,
I am adding a column of numbers with awk , however not getting correct output:
# awk '{sum+=$1} END {print sum}' datafile
2.15291e+06
How can I getthe output like : 2152910
Thank you..
# awk '{sum+=$1} END {print sum}' datafile
2.15079e+06 (3 Replies)
INPUT FILE:
9780743565219 "GODS OF NEWPORT" "JAKES, JOHN" 2006
OUTPUT FILE I NEED to CREATE FROM INPUT FILE:
cd /data/audiobooks/9780743565219
~/Desktop/mp3-to-m4b 9780743565219-GODS OF NEWPORT "GODS OF NEWPORT" "JAKES, JOHN" 2006 n ---------- Post updated at 04:19 PM ----------... (6 Replies)
Am new to AWk, Can anyone help me to get excepected output from given input please.
input file
student: name
details of them = details_needed
class: 5th_needed
adress: address_needed
Expected output:
details of them = 5th_needed = address_needed
---------- Post updated at... (5 Replies)
Hello
Here is an easy one
Data file
12345 (tab) Some text (tab) 53.432
23456 (tab) Some longer text (tab) 933.422
34567 (tab) Some different text (tab) 29.309
I need to awk these three tab-delimited columns so that the first two are unchanged (unformatted) and the third shows two decimal... (1 Reply)
Hello,
I shall like using the function awk to modify the contents of the following file:
/tmp/conf-1 -sec=sys,rw=lpar1:lpar2:lpar3,access=lpar1:lpar2:lpar3
/tmp/conf-2 -vers=4,sec=sys,rw=lpar4:lpar5:lpar6,access=lpar4:lpar5:lpar6
I need to have the result below towards another file
... (5 Replies)
Guys ,, pls .. need help with this ...
File 1
0A6C Not Visible ???:? NA:NA TDEV N/Grp'd NR 5121
0A6D Not Visible ***:* NA:NA TDEV N/Grp'd RW 33784
0A6E Not Visible ***:* NA:NA TDEV N/Grp'd RW 33784... (4 Replies)
Discussion started by: greycells
4 Replies
LEARN ABOUT DEBIAN
hhfilter
HHFILTER(1) User Commands HHFILTER(1)NAME
hhfilter - filter an alignment by maximum sequence identity of match states and minimum coverage
SYNOPSIS
hhfilter -i infile -o outfile [options]
DESCRIPTION
HHfilter version 2.0.15 (June 2012) Filter an alignment by maximum sequence identity of match states and minimum coverage (C) Johannes
Soeding, Michael Remmert, Andreas Biegert, Andreas Hauser Remmert M, Biegert A, Hauser A, and Soding J. HHblits: Lightning-fast iterative
protein sequence searching by HMM-HMM alignment. Nat. Methods 9:173-175 (2011).
-i <file>
read input file in A3M/A2M or FASTA format
-o <file>
write to output file in A3M format
-a <file>
append to output file in A3M format
OPTIONS -v <int>
verbose mode: 0:no screen output 1:only warings 2: verbose
-id [0,100] maximum pairwise sequence identity (%) (def=90)
-diff [0,inf[
filter MSA by selecting most diverse set of sequences, keeping at least this many seqs in each MSA block of length 50 (def=0)
-cov [0,100] minimum coverage with query (%) (def=0)
-qid [0,100] minimum sequence identity with query (%) (def=0)
-qsc [0,100] minimum score per column with query (def=-20.0)
-neff [1,inf]
target diversity of alignment (default=off)
Input alignment format:
-M a2m use A2M/A3M (default): upper case = Match; lower case = Insert; '-' = Delete; '.' = gaps aligned to inserts (may be omitted)
-M first
use FASTA: columns with residue in 1st sequence are match states
-M [0,100]
use FASTA: columns with fewer than X% gaps are match states
Example: hhfilter -id 50 -i d1mvfd_.a2m -o d1mvfd_.fil.a2m
hhfilter 2.0.15 June 2012 HHFILTER(1)