Sir,
I using the following commands in a file (part of a bigger script):
#!/bin/bash
cd /opt/oracle/bin
ls -lt | tail -1 | awk '{print $6}' >> /tmp/ramb.out
If I run this from the command prompt the result is:
2007-05-16
if I run it as a cron job then... (5 Replies)
Hi ,
I have a piece of code ...wherein I need to assign the following ...
1) A command line argument to a variable
e.g origCount=ARGV
2) A unix command to a variable
e.g result=`wc -l testFile.txt`
in my awk shell script
When I do this :
print "origCount" origCount --> I get the... (0 Replies)
AIX:Command to get netaddress/subnet address command in IPv4/IP6
Can anybody help us with a command to retrieve netaddress/subnet address command in IPv4/IP6 on aix machine.
net/subnet address is in the format 172.16.212.0(signifies all 255 machines in an IPv4 network) (2 Replies)
Hi everyone,
when executing this command in unix:
echo "WM7 Fatal Alerts:", $(cat query1.txt) > a.csvIt works fine, but running this command in a shell script gives an error saying that there's a syntax error.
here is content of my script:
tdbsrvr$ vi hc.sh
"hc.sh" 22 lines, 509... (4 Replies)
Hi,
Well my title isn't very clear I think. So to understand my goal:
I have a script "test1"
#!/bin/bash
xvkbd -text blabla
with xbindkeys, I bind F5 key in order it runs my test1 script
So when I press F5, test1 runs.
I'm under Emacs/Vi and I press F5 in order to have "blabla" be... (0 Replies)
HI Guys,
I hope you are well. I am trying to write a script that gets executed every time i open a shell (cshell). I have two questions about that
1) I need to enter these commands
$ echo $DISPLAY
$ setenv $DISPLAY output_of_echo_$display_command
How can i write a... (2 Replies)
I am working with a sh script on a solaris 9 zone (sol 10 host) that grabs information to build the configuration command line. the variables Build64, SSLopt, CONFIGopt, and CC are populated in the script. the script includes
CC=`which gcc`
CONFIGopt=' --prefix=/ --exec-prefix=/usr... (8 Replies)
below is the output xml string from some other command and i will be parsing it using awk
cat /tmp/alerts.xml
<Alert id="10102" name="APP-DS-ds_ha-140018-componentFailure-S" alertDefinitionId="13982" resourceId="11427" ctime="1359453507621" fixed="false" reason="If Event/Log Level(ANY) and... (2 Replies)
exec(): 0509-036 Cannot load program /usr/opt/freeware/bin/rpm because of the following errors:
0509-022 Cannot load module /opt/freeware/lib/libintl.a(libintl.so.1).
0509-150 Dependent module /opt/freeware/lib/libiconv.a(shr4.o) could not be loaded.
0509-152 Member... (4 Replies)
Hello Forum,
I'm making very good progress on my report thanks to the very helpful people on this forum. I've been able to successfully create my report for my Red Hat servers. But I do have a few ubuntu servers in the mix and I'd like to capture some data from them when an ssh connection is... (8 Replies)
Discussion started by: greavette
8 Replies
LEARN ABOUT DEBIAN
g_confrms
g_confrms(1) GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c g_confrms(1)NAME
g_confrms - fits two structures and calculates the rmsd
VERSION 4.5.4-dev-20110404-bc5695c
SYNOPSIS
g_confrms -f1 conf1.gro -f2 conf2.gro -o fit.pdb -n1 fit1.ndx -n2 fit2.ndx -no match.ndx -[no]h -[no]version -nice int -[no]w -[no]one
-[no]mw -[no]pbc -[no]fit -[no]name -[no]label -[no]bfac
DESCRIPTION
g_confrms computes the root mean square deviation (RMSD) of two structures after least-squares fitting the second structure on the first
one. The two structures do NOT need to have the same number of atoms, only the two index groups used for the fit need to be identical.
With -name only matching atom names from the selected groups will be used for the fit and RMSD calculation. This can be useful when com-
paring mutants of a protein.
The superimposed structures are written to file. In a .pdb file the two structures will be written as separate models (use rasmol -nmr-
pdb). Also in a .pdb file, B-factors calculated from the atomic MSD values can be written with -bfac.
FILES -f1 conf1.gro Input
Structure+mass(db): tpr tpb tpa gro g96 pdb
-f2 conf2.gro Input
Structure file: gro g96 pdb tpr etc.
-o fit.pdb Output
Structure file: gro g96 pdb etc.
-n1 fit1.ndx Input, Opt.
Index file
-n2 fit2.ndx Input, Opt.
Index file
-no match.ndx Output, Opt.
Index file
OTHER OPTIONS
-[no]hno
Print help info and quit
-[no]versionno
Print version info and quit
-nice int 19
Set the nicelevel
-[no]wno
View output .xvg, .xpm, .eps and .pdb files
-[no]oneno
Only write the fitted structure to file
-[no]mwyes
Mass-weighted fitting and RMSD
-[no]pbcno
Try to make molecules whole again
-[no]fityes
Do least squares superposition of the target structure to the reference
-[no]nameno
Only compare matching atom names
-[no]labelno
Added chain labels A for first and B for second structure
-[no]bfacno
Output B-factors from atomic MSD values
SEE ALSO gromacs(7)
More information about GROMACS is available at <http://www.gromacs.org/>.
Mon 4 Apr 2011 g_confrms(1)