Thank you again,
I have to extract the lines in file 2, whose coordinates are between Start and End positions of the file 1, which also belong to the same strain. In other words two assumptions must be fulfilled going line by line and check if the strain matches and if the coordinate is within the range formed by Start and End, then the expected output is the line of file 2.
for example
I know that there are lines that fulfilled this assumptions, I checked it by hand and found several lines.
---------- Post updated at 09:11 PM ---------- Previous update was at 07:39 PM ----------
Really I don't know what happens but the expected output is not that
is...
Coordinate type RefAllele Strain SNPAllele
240450 non <G> 6949_5_23 >A<
Sorry
Last edited by Scrutinizer; 05-07-2012 at 03:36 PM..
Reason: code tags
i have two files and i want to compare these two
it shoud print those lines which are not in 2nd file
a.txt
1236,AB,0
2345,CD,1
5679,EF,1
9123,AA,1
9223,AA,0
b.txt
1234,AB,0
2345,CD,1
5678,EF,1
9123,AA,0
o/p
1236,AB,0
5679,EF,1
9123,AA,1
9223,AA,0 (6 Replies)
Hi,
I am trying to find an alternative way to do tkdiff. In tkdiff the gui compares each line and highlights only the differences.
for eg:
John works at McDonalds s(test)
He was playing guitar tywejk
John works in McDonalds 9908
He was playing guitar
I am... (1 Reply)
Hi All,
I'm trying to figure out which are the trusted-ips and which are not using a script file.. I have a file named 'ip-list.txt' which contains some ip addresses and another file named 'trusted-ip-list.txt' which also contains some ip addresses. I want to read a line from... (4 Replies)
Hi ,
Im new to uxin environment and shell scripting....
please help me with the code for the following scenario.....
file 1 contains the following fields
abc 200 rupee IND
cdf 400 dollar USA
efg 300 euro GER
hij 600 pound ENG
file 2
SBI abc 321 dollar CANAD
kvr mnd ... (6 Replies)
Hi,
I want to compare 2 files and get output file into seperate folder.
Both file names will change daily with timestamp (ex: file1_06_17_2013_0514), so i can't mention the file names in the script to compare,
but i need to compare these 2 files daily and generate output to another... (28 Replies)
Hi Experts,
Would really appreciate if anyone can guide me how to compare two pdf files line by line and report the difference to another file. (3 Replies)
Hi Everyone,
I have a file as below:
IM2345638,sherfvf,usha,30
IM384940374,deiufbd,usha,30
IM323763822,cdejdkdnbds,theju,15
0,dhejdncbfd,us,20
IM398202038,dhekjdkdld,tj,30
0,foifsjd,u2,40
The output i need is as below
IM2345638,sherfvf,usha,30... (4 Replies)
I am trying to add a condition to the below perl that will capture the GTtag and place a specific string in the last field of each line. The problem is that the GT value used is not right after the tag rather it is a few fields away. The values should always be 0/1 or 1/2 and are in bold in the... (12 Replies)
I am looking for help in processing of those options: '-n' or '-p'
I understand what they do and how to use them.
But, I would like to use them with more than one file (and without any shell-loop; loading the 'perl' once.)
I did try it and -n works on 2 files.
Question is:
- is it possible to... (6 Replies)
My file (the output of an experiment) starts off looking like this,
_____________________________________________________________
Subjects incorporated to date: 001
Data file started on machine PKSHS260-05CP
**********************************************************************
Subject 1,... (9 Replies)
Discussion started by: samonl
9 Replies
LEARN ABOUT MOJAVE
groff_me
GROFF_ME(7) Miscellaneous Information Manual GROFF_ME(7)NAME
groff_me - troff macros for formatting papers
SYNOPSIS
groff -me [ options ] file ...
groff -m me [ options ] file ...
DESCRIPTION
This manual page describes the GNU version of the -me macros, which is part of the groff document formatting system. This version can be
used with both GNU troff and Unix troff. This package of troff macro definitions provides a canned formatting facility for technical
papers in various formats.
The macro requests are defined below. Many troff requests are unsafe in conjunction with this package, however, these requests may be used
with impunity after the first .pp:
.bp begin new page
.br break output line here
.sp n insert n spacing lines
.ls n (line spacing) n=1 single, n=2 double space
.na no alignment of right margin
.ce n center next n lines
.ul n underline next n lines
Output of the pic, eqn, refer, and tbl preprocessors is acceptable as input.
FILES
/usr/share/groff/1.19.2/tmac/me.tmac (a wrapper file for e.tmac)
/usr/share/groff/1.19.2/tmac/e.tmac
SEE ALSO groff(1), troff(1)-me Reference Manual, Eric P. Allman
Writing Papers with Groff Using -me
REQUESTS
This list is incomplete; see The -me Reference Manual for interesting details.
Request Initial Cause Explanation
Value Break
.(c - yes Begin centered block
.(d - no Begin delayed text
.(f - no Begin footnote
.(l - yes Begin list
.(q - yes Begin major quote
.(x x - no Begin indexed item in index x
.(z - no Begin floating keep
.)c - yes End centered block
.)d - yes End delayed text
.)f - yes End footnote
.)l - yes End list
.)q - yes End major quote
.)x - yes End index item
.)z - yes End floating keep
.++ m H - no Define paper section. m defines the part of the paper, and can be C (chapter), A (appendix), P (preliminary, e.g.,
abstract, table of contents, etc.), B (bibliography), RC (chapters renumbered from page one each chapter), or RA (ap-
pendix renumbered from page one).
.+c T - yes Begin chapter (or appendix, etc., as set by .++). T is the chapter title.
.1c 1 yes One column format on a new page.
.2c 1 yes Two column format.
.EN - yes Space after equation produced by eqn or neqn.
.EQ x y - yes Precede equation; break out and add space. Equation number is y. The optional argument x may be I to indent equation
(default), L to left-adjust the equation, or C to center the equation.
.GE - yes End gremlin picture.
.GS - yes Begin gremlin picture.
.PE - yes End pic picture.
.PS - yes Begin pic picture.
.TE - yes End table.
.TH - yes End heading section of table.
.TS x - yes Begin table; if x is H table has repeated heading.
.b x no no Print x in boldface; if no argument switch to boldface.
.ba +n 0 yes Augments the base indent by n. This indent is used to set the indent on regular text (like paragraphs).
.bc no yes Begin new column
.bi x no no Print x in bold italics (nofill only)
.bu - yes Begin bulleted paragraph
.bx x no no Print x in a box (nofill only).
.ef 'x'y'z' '''' no Set even footer to x y z
.eh 'x'y'z' '''' no Set even header to x y z
.fo 'x'y'z' '''' no Set footer to x y z
.hx - no Suppress headers and footers on next page.
.he 'x'y'z' '''' no Set header to x y z
.hl - yes Draw a horizontal line
.i x no no Italicize x; if x missing, italic text follows.
.ip x y no yes Start indented paragraph, with hanging tag x. Indentation is y ens (default 5).
.lp yes yes Start left-blocked paragraph.
.np 1 yes Start numbered paragraph.
.of 'x'y'z' '''' no Set odd footer to x y z
.oh 'x'y'z' '''' no Set odd header to x y z
.pd - yes Print delayed text.
.pp no yes Begin paragraph. First line indented.
.r yes no Roman text follows.
.re - no Reset tabs to default values.
.sh n x - yes Section head follows, font automatically bold. n is level of section, x is title of section.
.sk no no Leave the next page blank. Only one page is remembered ahead.
.sm x - no Set x in a smaller pointsize.
.sz +n 10p no Augment the point size by n points.
.tp no yes Begin title page.
.u x - no Underline argument (even in troff). (Nofill only).
.uh - yes Like .sh but unnumbered.
.xp x - no Print index x.
3rd Berkeley Distribution 27 June 2001 GROFF_ME(7)