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Top Forums UNIX for Dummies Questions & Answers Need script to merge two spreadsheets Post 302634013 by Corona688 on Wednesday 2nd of May 2012 06:27:22 PM
Old 05-02-2012
Code:
$ cat merge.awk

BEGIN { FS="\t"; OFS="\t" }

NR==1 {
        print
        MAX=NF
        for(N=1; N<=NF; N++)    ORDER[$N]=N
        next
}

NR==FNR { D[$1]=$0; next }

# Pick up order of fields from second file
FNR==1 {
        for(N=1; N<=NF; N++)    REORDER[N]=ORDER[$N];
        next
}

$1 in D {
        print D[$1]
        for(N=2; N<=MAX; N++)
                printf("%s%s", OFS, $(REORDER[N]));
        printf("\n");
}

$ cat file1

gene    W       X       Y       Z
I       1       2       3       4
II      5       6       7       8
III     9       10      11      12
IV      13      14      15      16

# Note the altered column order
$ cat file2

gene    W       Y       X       Z
I       d1
II              a3
III     b1
IV                              c1

$ awk -f merge.awk file1 file2

gene    W       X       Y       Z
I       1       2       3       4
        d1
II      5       6       7       8
                        a3
III     9       10      11      12
        b1
IV      13      14      15      16
                                c1

$

 

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merge(1)																  merge(1)

NAME
merge - three-way file merge SYNOPSIS
merge [-Llabel1 [-Llabel3]] [-p] [-q] file1 file2 file3 DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result goes to standard output if -p is present, into file1 otherwise. merge is useful for combining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are modifications of file2. Then merge combines both changes. An overlap occurs if both file1 and file3 have changes in a common segment of lines. On a few older hosts where diff3 does not support the -E option, merge does not detect overlaps, and merely supplies the changed lines from file3. On most hosts, if overlaps occur, merge out- puts a message (unless the -q option is given), and includes both alternatives in the result. The alternatives are delimited as follows: <<<<<<< file1 lines in file1 ======= lines in file3 >>>>>>> file3 If there are overlaps, the user should edit the result and delete one of the alternatives. If the -L label1 and -L label3 options are given, the labels are output in place of the names file1 and file3 in overlap reports. DIAGNOSTICS
Exit status is 0 for no overlaps, 1 for some overlaps, 2 for trouble. IDENTIFICATION
Author: Walter F. Tichy. Revision Number: 1.1.6.2; Release Date: 1993/10/07. Copyright (C) 1982, 1988, 1989 by Walter F. Tichy. Copyright (C) 1990, 1991 by Paul Eggert. SEE ALSO
diff3(1), diff(1), rcsmerge(1), co(1) merge(1)
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