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Full Discussion: Counting characters vertically
Top Forums Shell Programming and Scripting Counting characters vertically Post 302629385 by Lucky Ali on Tuesday 24th of April 2012 02:57:36 PM
Old 04-24-2012
Thanks, it worked.

I do have another problem as well, which occurred after seeing this output.

This could be an entirely different question.
I have the same formated file as above but now with 4 positions. For each position there are the chances of being 2 types of character, either the 1 type character or 2 type character. For example at position 1, characters should be either T (for 1 type) or C (for 2 type), similiarily for position 2, C (for 1 type) or T (2 type), position 3, A(for 1 type)or G (for 2 type) and position 4, T (for 1 type) or C (for 2 type).
below is the input file
Code:
>A1
TCAT
>A2
CTGC
>A3
TCGC
>A4
TTAT
>A5
TTTT

Based on this, I want to characterize all the sub-headers (>A1, A2, A3, A4, A5) in the above file so that I would know which type it is.

the desired output ( No need for the part after #, it is just to make it clearer)
Code:
PLease let me know the way to do it in awk
A1 1 #all type 1 characters
A2 2 # all type 2 characters
A3 mixed  # contains at least one type 1 or type 2 characters in any of the 4 positions
A4 mixed  # contains at least one type 1 or type 2 characters in any of the 4 positions
A5 NA #if any of the positions have any other character other than type 1 or type

 

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LEARN ABOUT DEBIAN

paps

PAPS(1) 						      General Commands Manual							   PAPS(1)

NAME

       paps - UTF-8 to PostScript converter using Pango

SYNOPSIS

       paps [options] files...

DESCRIPTION

       paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves
       through the pango ft2 backend.

OPTIONS

       These programs follow the usual GNU command line syntax, with long options starting with  two  dashes  (`-').   A  summary  of  options	is
       included below.

       --landscape
	      Landscape output. Default is portrait.

       --columns=cl
	      Number of columns output. Default is 1.
	      Please notice this option isn't related to the terminal length as in a "80 culums terminal".

       --font=desc
	      Set the font description. Default is Monospace 12.

       --rtl  Do right to left (RTL) layout.

       --paper ps
	      Choose paper size. Known paper sizes are legal, letter and A4. Default is A4.

       Postscript points
	      Each postscript point equals to 1/72 of an inch. 36 points are 1/2 of an inch.

       --bottom-margin=bm
	      Set bottom margin. Default is 36 postscript points.

       --top-margin=tm
	      Set top margin. Default is 36 postscript points.

       --left-margin=lm
	      Set left margin. Default is 36 postscript points.

       --right-margin=rm
	      Set right margin. Default is 36 postscript points.

       --gutter-width=gw
	      Set gutter width. Default is 40 postscript points.

       --help Show summary of options.

       --header
	      Draw page header for each page.

       --markup
	      Interpret the text as pango markup.

       --lpi  Set the lines per inch. This determines the line spacing.

       --cpi  Set the characters per inch. This is an alternative method of specifying the font size.

       --stretch-chars
	      Indicates  that  characters  should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops
	      behaviour.

AUTHOR

       paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>.

       This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others).

								  April  17, 2006							   PAPS(1)
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