Sponsored Content
Top Forums Shell Programming and Scripting awk to split one field and print the last two fields within the split part. Post 302624811 by agama on Monday 16th of April 2012 10:54:08 PM
Old 04-16-2012
Based on your sample I think this works. My assumption was that any row with pipe separated elements in the thrid field would have UniProt as the next to last in the series. If not, use a[n-1] if you want to capture that data, or add an if to test if a[n-1] is UniProt.

Code:
awk -F "\t" '
    {
        n = split( $3, a, "|" );
        if( n < 2 )
            data = sprintf( "%s\t", a[1] );
        else
            data = sprintf( "%s\t%s", "UniProt", a[n] );  #assumption that all pipe separated data contains UniProt at a[n-1]

        printf( "%s\t%s\t%s\t%s\n", $1, $2, data, $4 );
    }
' input-file >output-file


Last edited by agama; 04-17-2012 at 10:02 PM.. Reason: typo
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Split a field in awk script

Hi all, I have a field in the line, let's say argument $6, which is in the format 00.00 If i want to split the field to get rid of the "." in between of the amount, how can i do that i awk script? I have it like this split($6,a,".") but it will get rid of the last 2 digits after the... (4 Replies)
Discussion started by: CamTu
4 Replies

2. Shell Programming and Scripting

can Awk split my field on the .

I am trying to pull data out of a file to execute a series of repetitive commands. One of the fields is a {hex number}.{hex number} pattern. I need the first part of that structure to pass into the command. The file structure is like this: A 2007/10/20 09:50:00 li text ef6da.1 name ... (6 Replies)
Discussion started by: oly_r
6 Replies

3. Shell Programming and Scripting

How to split a field into two fields?

Hi, I have a comma delimited text file where character fields (as opposed to numeric and date fields) are always enclosed with double quotes. Records are separated by the newline character. In a shell script I would like to split a particular field into two separate fields (enclosed with double... (4 Replies)
Discussion started by: vbrown
4 Replies

4. Shell Programming and Scripting

Split field with awk

Hi there I have a text file with several fields separated by ";" as follow : 5466-43;5466;JOAN;LIGA;LIGA ESPANOLA;43;DEP LA CORUNA - OSASUNA;10/01/10 17:00 5466-44;5466;CARLES;LIGA;LIGA ESPANOLA;44;MALAGA - ATHL BILBAO;10/01/10 17:00 5466-45;5466;FAB;LIGA;LIGA ESPANOLA;45;REAL MADRID -... (4 Replies)
Discussion started by: capnino
4 Replies

5. Shell Programming and Scripting

AWK:Split fields separated by semicolon

Hi all, I have a .vcf file which contains 8 coulmns and the data under each column as shown below, CHROM POS ID REF ALT QUAL FILTER INFO 1 3000012 . A G 126 ... (6 Replies)
Discussion started by: mehar
6 Replies

6. Shell Programming and Scripting

awk split lines without knowing the number of fields a-priori

I want to use awk to split fields and put them into a file but I don't know the number of fields for example, in the following line Ports: 22/filtered/tcp//ssh///, 53/open/tcp//tcpwrapped///, 111/filtered/tcp//rpcbind///, 543/filtered/tcp//klogin///, 544/filtered/tcp//kshell///,... (3 Replies)
Discussion started by: esolvepolito
3 Replies

7. Shell Programming and Scripting

How to print 1st field and last 2 fields together and the rest of the fields after it using awk?

Hi experts, I need to print the first field first then last two fields should come next and then i need to print rest of the fields. Input : a1,abc,jsd,fhf,fkk,b1,b2 a2,acb,dfg,ghj,b3,c4 a3,djf,wdjg,fkg,dff,ggk,d4,d5 Expected output: a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
Discussion started by: 100bees
6 Replies

8. Shell Programming and Scripting

awk split after second underscore in field

I am trying to split a tab-delimeted file using awk after the second _ in bold. The awk below is close but splits on the first _, and I am not sure how to use the second _. Thank you :). file chr1 92145889 92149424 NM_001195684_exon_0_10_chr1_92145900_r 0 - chr1 92161218 ... (4 Replies)
Discussion started by: cmccabe
4 Replies

9. Shell Programming and Scripting

awk to add plus or minus to fields and split another field

In the tab-delimited input below I am trying to use awk to -10 from $2 and +10 to $3. Something like awk -F'\t' -v OFS='\t' -v s=10 '{split($4,a,":"); print $1,$2-s,$3+s,a,$5,$6} | awk {split(a,b,"-"); print $1,$2-s,$3+s,b-s,b+s,$5,$6}' input should do that. I also need to -10 from $4... (2 Replies)
Discussion started by: cmccabe
2 Replies

10. UNIX for Beginners Questions & Answers

awk to split field twice using two deliminators

In the awk I am splitting on the : into array a, then splitting on the - into element b. I can not seem to duplicate b if there is no - after it. Lines 1,2,4 are examples. If there is a - after the number in b then the value to the right of it is $3 in the ouput. Thank you :). awk... (2 Replies)
Discussion started by: cmccabe
2 Replies
split(n)						       Tcl Built-In Commands							  split(n)

__________________________________________________________________________________________________________________________________________________

NAME
split - Split a string into a proper Tcl list SYNOPSIS
split string ?splitChars? _________________________________________________________________ DESCRIPTION
Returns a list created by splitting string at each character that is in the splitChars argument. Each element of the result list will con- sist of the characters from string that lie between instances of the characters in splitChars. Empty list elements will be generated if string contains adjacent characters in splitChars, or if the first or last character of string is in splitChars. If splitChars is an empty string then each character of string becomes a separate element of the result list. SplitChars defaults to the standard white-space char- acters. EXAMPLES
Divide up a USENET group name into its hierarchical components: split "comp.lang.tcl.announce" . -> comp lang tcl announce See how the split command splits on every character in splitChars, which can result in information loss if you are not careful: split "alpha beta gamma" "temp" -> al {ha b} {} {a ga} {} a Extract the list words from a string that is not a well-formed list: split "Example with {unbalanced brace character" -> Example with {unbalanced brace character Split a string into its constituent characters split "Hello world" {} -> H e l l o { } w o r l d PARSING RECORD-ORIENTED FILES Parse a Unix /etc/passwd file, which consists of one entry per line, with each line consisting of a colon-separated list of fields: ## Read the file set fid [open /etc/passwd] set content [read $fid] close $fid ## Split into records on newlines set records [split $content " "] ## Iterate over the records foreach rec $records { ## Split into fields on colons set fields [split $rec ":"] ## Assign fields to variables and print some out... lassign $fields userName password uid grp longName homeDir shell puts "$longName uses [file tail $shell] for a login shell" } SEE ALSO
join(n), list(n), string(n) KEYWORDS
list, split, string Tcl split(n)
All times are GMT -4. The time now is 08:36 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy