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Top Forums Shell Programming and Scripting print out missing files in a sequence Post 302616293 by Corona688 on Friday 30th of March 2012 08:32:26 PM
Old 03-30-2012
The trouble with detecting holes in sequences is, how do you detect a hole at the beginning, or the end? Unless you really do know what files are supposed to be there, you're going to be reduced to guessing in some situations no matter what.

Will there ever be more than one sequence in this folder, or just the one?
 

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gdcmtar(1)							       GDCM								gdcmtar(1)

NAME
gdcmtar - Concatenate/Extract DICOM files. SYNOPSIS
gdcmtar [options] file-in file-out DESCRIPTION
The gdcmtar is a command line tool used to tar/untar multi-frames images (including SIEMENS MOSAIC file) PARAMETERS
file-in DICOM input filename file-out DICOM output filename options options --enhance enhance (default) -U --unenhance unenhance -M --mosaic Split SIEMENS Mosaic image into multiple frames. -p --pattern Specify trailing file pattern. --root-uid Root UID. general options -h --help print this help text and exit -v --version print version information and exit -V --verbose verbose mode (warning+error). -W --warning warning mode, print warning information -E --error error mode, print error information -D --debug debug mode, print debug information environment variable GDCM_ROOT_UID Root UID Typical usage SIEMENS Mosaic $ gdcminfo MR-sonata-3D-as-Tile.dcm MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage] TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian] NumberOfDimensions: 2 Dimensions: (384,384,1) ... $ gdcmtar --mosaic -i MR-sonata-3D-as-Tile.dcm -o mosaic --pattern %03d.dcm Will output: -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic000.dcm -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic001.dcm -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic002.dcm -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic003.dcm -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic004.dcm -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic005.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic006.dcm -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic007.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic008.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic009.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic010.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic011.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic012.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic013.dcm -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic014.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic015.dcm -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic016.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic017.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic018.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic019.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic020.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic021.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic022.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic023.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic024.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic025.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic026.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic027.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic028.dcm -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic029.dcm -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic030.dcm $ gdcminfo mosaic000.dcm MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage] TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian] NumberOfDimensions: 2 Dimensions: (64,64,1) ... SEE ALSO
gdcmdump(1), gdcmraw(1), gdcminfo(1) COPYRIGHT
Copyright (c) 2006-2011 Mathieu Malaterre Version 2.2.0 Tue Feb 5 2013 gdcmtar(1)
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