Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: count different characters from one column
Top Forums UNIX for Dummies Questions & Answers count different characters from one column Post 302610997 by Scrutinizer on Thursday 22nd of March 2012 05:14:07 AM
Old 03-22-2012
Try:
Code:
awk 'BEGIN{split("[Aa] [gG] [tT] [cC]",S)}{for(i in S){n=gsub(S[i],x,$6); s=s (s?",":x) S[i]"="n}NF-=1; $5=s; s=x}1' infile

Code:
1023 A A 56 [gG]=2,[tT]=0,[cC]=8,[Aa]=0
1024 T T 86 [gG]=0,[tT]=0,[cC]=0,[Aa]=10
1025 G G 125 [gG]=0,[tT]=8,[cC]=0,[Aa]=0

Last edited by Scrutinizer; 03-22-2012 at 06:25 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

count characters in specific records

I have a text file which represents a http flow like this: HTTP/1.1 200 OK Date: Fri, 23 Jan 2009 17:16:24 GMT Server: Apache Last-Modified: Fri, 23 Jan 2009 17:08:03 GMT Accept-Ranges: bytes Cache-Control: max-age=540 Expires: Fri, 23 Jan 2009 17:21:31 GMT Vary: Accept-Encoding ... (1 Reply)
Discussion started by: littleboyblu
1 Replies

2. Shell Programming and Scripting

awk count characters, sum, and divide by another column

Hi All, I am another biologist attempting to parse a large txt file containing several million lines like: tucosnp 56762 T Y 228 228 60 23 .CcCcc,,..c.c,cc,,.C... What I need to do is get the frequency of periods (.) plus commas (,) in column 9, and populate this number into another... (1 Reply)
Discussion started by: peromhc
1 Replies

3. UNIX for Dummies Questions & Answers

Count the characters in a string

Hi all, I like to know how to get the count of each character in a given word. Using the commands i can easily get the output. How do it without using the commands ( in shell programming or any programming) if you give outline of the program ( pseudo code ) i used the following commands ... (3 Replies)
Discussion started by: itkamaraj
3 Replies

4. Shell Programming and Scripting

Count number of characters in particular column

Hi i have data like abchd 124 ldskc aattggcc each separated by tab space i want to count number of characters in 4th column and print it in new column with tabspace for every line can anyone help me how to do it. Thanks. (3 Replies)
Discussion started by: bhargavpbk88
3 Replies

5. Shell Programming and Scripting

Count specific characters at specific column positions

Hi all, I need help. I have an input text file (input.txt) like this: 21 GTGCAACACCGTCTTGAGAGG 50 21 GACCGAGACAGAATGAAAATC 73 21 CGGGTCTGTAGTAGCAAACGC 108 21 CGAAAAATGAACCCCTTTATC 220 21 CGTGATCCTGTTGAAGGGTCG 259 Now I need to count A/T/G/C numbers at each character location in column... (2 Replies)
Discussion started by: thienxho
2 Replies

6. Shell Programming and Scripting

Remove the first character from the fourth column only if the column has four characters

I have a file as follows ATOM 5181 N AMET K 406 12.440 6.552 25.691 0.50 7.37 N ATOM 5182 CA AMET K 406 13.685 5.798 25.578 0.50 5.87 C ATOM 5183 C AMET K 406 14.045 5.179 26.909 0.50 5.07 C ATOM 5184 O MET K... (14 Replies)
Discussion started by: hasanabdulla
14 Replies

7. Shell Programming and Scripting

Count characters after a line

Hi All! I would like to solve a problem but I have no clue of how do it!I will be grateful if someone could help me! I have a file like this: > genes | transcript ...sequence.... >ENSMUSG00000006638|ENSMUST00000006814 GGGAAATGGAATACCCCTACACAACCAAGATGCTGAGTTCCTCCCTGAGCCCGCAAAACG... (2 Replies)
Discussion started by: giuliangiuseppe
2 Replies

8. Shell Programming and Scripting

Read first column and count lines in second column using awk

Hello all, I would like to ask your help here: I've a huge file that has 2 columns. A part of it is: sorted.txt: kss23 rml.67lkj kss23 zhh.6gf kss23 nhd.09.fdd kss23 hp.767.88.89 fl67 nmdsfs.56.df.67 fl67 kk.fgf.98.56.n fl67 bgdgdfg.hjj.879.d fl66 kl..hfh.76.ghg fl66... (5 Replies)
Discussion started by: Padavan
5 Replies

9. Shell Programming and Scripting

Column 2 string count in Column 3

My I/p is Col1|Col2|Col3 2116209997932|POSIX INC|POSIX 2116209997933|POSIX INC|POSIX 2116210089479|POSIX INC|POSIX 2116210180502|POSIX INC|POSIX 2116210512279|POSIX INC|Aero 2116210516838|POSIX INC|POSIX 2116210534342|POSIX INC|postal 2116210534345|POSIX INC|postal ... (6 Replies)
Discussion started by: nikhil jain
6 Replies

10. Shell Programming and Scripting

Count consecutive characters

Need to count consecutive characters in a string and give the output as below i/p=aaaabbcaa o/p=a4b2c1a2 (10 Replies)
Discussion started by: prasanna2166
10 Replies

LEARN ABOUT CENTOS

locale::codes::langext

Locale::Codes::LangExt(3)				User Contributed Perl Documentation				 Locale::Codes::LangExt(3)

NAME

       Locale::Codes::LangExt - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangExt;

	  $lext = code2langext('acm');		       # $lext gets 'Mesopotamian Arabic'
	  $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm'

	  @codes   = all_langext_codes();
	  @names   = all_langext_names();

DESCRIPTION

       The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in
       the IANA language registry.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
       registry codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or
       a constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langext('acm','alpha');
	  $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic.

	   This is the default code set.

ROUTINES

       code2langext ( CODE [,CODESET] )
       langext2code ( NAME [,CODESET] )
       langext_code2code ( CODE ,CODESET ,CODESET2 )
       all_langext_codes ( [CODESET] )
       all_langext_names ( [CODESET] )
       Locale::Codes::LangExt::rename_langext  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangExt::add_langext  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangExt::delete_langext  ( CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangExt::delete_langext_alias  ( NAME )
       Locale::Codes::LangExt::rename_langext_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::delete_langext_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iana.org/assignments/language-subtag-registry
	   The IANA language subtag registry.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.3							    2013-02-27						 Locale::Codes::LangExt(3)
All times are GMT -4. The time now is 12:28 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy