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Top Forums Shell Programming and Scripting Make multiple awk files into an executable Post 302604702 by birei on Monday 5th of March 2012 06:09:25 PM
Old 03-05-2012
Give a try to next awk script:
Code:
$ cat 1.txt
chr1 14765298 14766727 def
chr1 16759093 16760238 def
chr1 16759236 16760238 def
chr1 20782516 20784428 him
chr1 20989962 20991078 her
chr2 31672150 31673532 abc
chr2 33157721 33158124 abc
chr3 34542283 34542962 abc
chr3 38248682 38251416 abc
chr4 58562053 58567653 abc
$ cat 2.txt
chr1 21438731 21439423 26.12
chr1 33939851 33940673 34.76
chr1 36779864 36780494 20.16
chr1 36817091 36817917 27.22
chr2 36977015 36977908 19.27
chr3 40475125 40475885 21.58
chr3 40483838 40484616 15.3
chr4 40502827 40503675 10.61
chr4 40532299 40533156 14.78
chr5 43593022 43594143 24.33
$ cat script.awk
BEGIN {
        if ( ARGC != 3 ) {
                print "Usage: awk -f script.awk <file1> <file2>"
                exit 0
        }
}

FNR == NR {
        f1_data[ FNR ] = $0
        next
}

FNR < NR {
        for ( i = 1; i <= length( f1_data ); i++ ) {
                split( f1_data[ i ], fields )
                if ( fields[1] != $1 ) {
                        next
                }
                substraction = fields[2] - $2
                if (substraction >= -1000000 && substraction <= 1000000 ) {
                        for ( j = 2; j <= length( fields ); j++ ) {
                                f1_line = (f1_line ? f1_line " " : "" ) fields[j]
                        }
                        printf "%s %s %d\n", $0, f1_line, substraction
                        f1_line = ""
                }
        }
}
$ awk -f script.awk 1.txt 2.txt 
chr1 21438731 21439423 26.12 20782516 20784428 him -656215
chr1 21438731 21439423 26.12 20989962 20991078 her -448769

This User Gave Thanks to birei For This Post:
 

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subst(n)						       Tcl Built-In Commands							  subst(n)

__________________________________________________________________________________________________________________________________________________

NAME
subst - Perform backslash, command, and variable substitutions SYNOPSIS
subst ?-nobackslashes? ?-nocommands? ?-novariables? string _________________________________________________________________ DESCRIPTION
This command performs variable substitutions, command substitutions, and backslash substitutions on its string argument and returns the fully-substituted result. The substitutions are performed in exactly the same way as for Tcl commands. As a result, the string argument is actually substituted twice, once by the Tcl parser in the usual fashion for Tcl commands, and again by the subst command. If any of the -nobackslashes, -nocommands, or -novariables are specified, then the corresponding substitutions are not performed. For example, if -nocommands is specified, command substitution is not performed: open and close brackets are treated as ordinary characters with no special interpretation. Note that the substitution of one kind can include substitution of other kinds. For example, even when the -novariables option is speci- fied, command substitution is performed without restriction. This means that any variable substitution necessary to complete the command substitution will still take place. Likewise, any command substitution necessary to complete a variable substitution will take place, even when -nocommands is specified. See the EXAMPLES below. If an error occurs during substitution, then subst will return that error. If a break exception occurs during command or variable substi- tution, the result of the whole substitution will be the string (as substituted) up to the start of the substitution that raised the excep- tion. If a continue exception occurs during the evaluation of a command or variable substitution, an empty string will be substituted for that entire command or variable substitution (as long as it is well-formed Tcl.) If a return exception occurs, or any other return code is returned during command or variable substitution, then the returned value is substituted for that substitution. See the EXAMPLES below. In this way, all exceptional return codes are "caught" by subst. The subst command itself will either return an error, or will complete successfully. EXAMPLES
When it performs its substitutions, subst does not give any special treatment to double quotes or curly braces (except within command sub- stitutions) so the script set a 44 subst {xyz {$a}} returns "xyz {44}", not "xyz {$a}" and the script set a "p} q {r" subst {xyz {$a}} returns "xyz {p} q {r}", not "xyz {p} q {r}". When command substitution is performed, it includes any variable substitution necessary to evaluate the script. set a 44 subst -novariables {$a [format $a]} returns "$a 44", not "$a $a". Similarly, when variable substitution is performed, it includes any command substitution necessary to retrieve the value of the variable. proc b {} {return c} array set a {c c [b] tricky} subst -nocommands {[b] $a([b])} returns "[b] c", not "[b] tricky". The continue and break exceptions allow command substitutions to prevent substitution of the rest of the command substitution and the rest of string respectively, giving script authors more options when processing text using subst. For example, the script subst {abc,[break],def} returns "abc,", not "abc,,def" and the script subst {abc,[continue;expr {1+2}],def} returns "abc,,def", not "abc,3,def". Other exceptional return codes substitute the returned value subst {abc,[return foo;expr {1+2}],def} returns "abc,foo,def", not "abc,3,def" and subst {abc,[return -code 10 foo;expr {1+2}],def} also returns "abc,foo,def", not "abc,3,def". SEE ALSO
Tcl(n), eval(n), break(n), continue(n) KEYWORDS
backslash substitution, command substitution, variable substitution Tcl 7.4 subst(n)
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