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Top Forums Shell Programming and Scripting Make multiple awk files into an executable Post 302604700 by jacobs.smith on Monday 5th of March 2012 05:41:28 PM
Old 03-05-2012
Hi Birei,

Thanks for ur post.

I somehow missed the output.

Here is the output. A small change, in my last step, instead of -5000 to 5000, I chose -1000000 to 1000000 for our input convenience. In that case, my final output would be this one

Quote:
output.txt
chr1 21438731 21439423 26.12 20782516 20784428 him 656215
chr1 21438731 21439423 26.12 20989962 20991078 her 448769
Basically I want to grab those records that are at a distance of 1000000 between column2 of file1 and column2 of file2 and print the whole record from both files.

Please feel free to re-post any comments u might come across.

Thanks in advance.
 

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cmp(1)							      General Commands Manual							    cmp(1)

Name
       cmp - compare two files

Syntax
       cmp [-l | -s] file1 file2  [ skip1 ]  [ skip2 ]

Description
       The  command  compares two files.  If either file1 or file2 is `-', standard input is used for the file.  With no options, makes no comment
       if the files are the same.  If they differ, it reports the byte and line number at which the difference occurred to  standard  output.	If
       one file is an initial subsequence of the other a message including the file name is written to standard error.

       The optional skip1 and skip2 parameters are initial byte offsets into file1 and file2 respectively and may be either octal, by specifying a
       leading 0, or decimal.  When using skip1 and skip2 the offset is treated as the start of the respective input file.  Only one option may be
       specified  at  a  time.	Only one of the input files may be standard input at a time.  Because the line number is not calculated when using
       either of the options the use of either flag will increase the speed of

Options
       -l Long format:	prints the byte number (decimal) and the differing bytes (octal) for each difference.

       -s Suppresses normal output and sets the exit code only.

Diagnostics
       Exit code 0 is returned for identical files, 1 for different files, and 2 for an inaccessible or missing argument.

See Also
       comm(1), diff(1)

																	    cmp(1)
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