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Top Forums Shell Programming and Scripting Make multiple awk files into an executable Post 302604700 by jacobs.smith on Monday 5th of March 2012 05:41:28 PM
Old 03-05-2012
Hi Birei,

Thanks for ur post.

I somehow missed the output.

Here is the output. A small change, in my last step, instead of -5000 to 5000, I chose -1000000 to 1000000 for our input convenience. In that case, my final output would be this one

Quote:
output.txt
chr1 21438731 21439423 26.12 20782516 20784428 him 656215
chr1 21438731 21439423 26.12 20989962 20991078 her 448769
Basically I want to grab those records that are at a distance of 1000000 between column2 of file1 and column2 of file2 and print the whole record from both files.

Please feel free to re-post any comments u might come across.

Thanks in advance.
 

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Char(3) 						User Contributed Perl Documentation						   Char(3)

NAME
PDL::Char -- PDL subclass which allows reading and writing of fixed-length character strings as byte PDLs SYNOPSIS
use PDL; use PDL::Char; my $pchar = PDL::Char->new( [['abc', 'def', 'ghi'],['jkl', 'mno', 'pqr']] ); $pchar->setstr(1,0,'foo'); print $pchar; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'foo' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] print $pchar->atstr(2,0); # Prints: # ghi DESCRIPTION
This subclass of PDL allows one to manipulate PDLs of 'byte' type as if they were made of fixed length strings, not just numbers. This type of behavior is useful when you want to work with charactar grids. The indexing is done on a string level and not a character level for the 'setstr' and 'atstr' commands. This module is in particular useful for writing NetCDF files that include character data using the PDL::NetCDF module. FUNCTIONS
new Function to create a byte PDL from a string, list of strings, list of list of strings, etc. # create a new PDL::Char from a perl array of strings $strpdl = PDL::Char->new( ['abc', 'def', 'ghij'] ); # Convert a PDL of type 'byte' to a PDL::Char $strpdl1 = PDL::Char->new (sequence (byte, 4, 5)+99); $pdlchar3d = PDL::Char->new([['abc','def','ghi'],['jkl', 'mno', 'pqr']]); string Function to print a character PDL (created by 'char') in a pretty format. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] # 'string' is overloaded to the "" operator, so: # print $char; # should have the same effect. setstr Function to set one string value in a character PDL. The input position is the position of the string, not a character in the string. The first dimension is assumed to be the length of the string. The input string will be null-padded if the string is shorter than the first dimension of the PDL. It will be truncated if it is longer. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); $char->setstr(0,1, 'foobar'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'pqr'] # ] $char->setstr(2,1, 'f'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'f'] -> note that this 'f' is stored "f" # ] atstr Function to fetch one string value from a PDL::Char type PDL, given a position within the PDL. The input position of the string, not a character in the string. The length of the input string is the implied first dimension. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char->atstr(0,1); # Prints: # jkl perl v5.8.0 2001-05-27 Char(3)
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