Hi All,
I get a flat file with its last field data splitting onto a new line.I got this program from Vgersh which when run would cancatenate the split data back to the end of the previous records.But this program fails when it encounters a page break between the split data and the previous... (5 Replies)
I was wondering if somebody could help me with something on UNIX. I have a file that looks like this -
"nelson,bill","bill","123 Main St","Mpls","MN",55444,8877,william
I want to replace all comma with pipes (|), except if the comma is within double quotes. (The first field is an example of... (8 Replies)
Hi,
I want to remove the first line from a flat file using unix command as simple as possible. Can anybody give me a hand ?
Thanks in advance.
xli (21 Replies)
Hi
I have the fixed width flat file having the following data
12345aaaaaaaaaabbbbbbbbbb
12365sssssssssscccccccccc
12365sssss
12367ddddddddddvvvvvvvvvv
12367 vvvvv
Here the first column is length 5 second is length 10 third is length 10
if the second or third column exceeds... (3 Replies)
hello everybody
i am looking for a shell to cut a flat file (with a long unique line) according to a certain number of characters and redirect every result to an output file.
here is an example
MyFile :
12 3 456 12 3 456 12 3 456 .....
and i took every 9-characters including BLANKS... (6 Replies)
I have a flat file that contains records similar to the following two lines;
1984/11/08 7 700000 123456789 2
1984/11/08 1941/05/19 7 700000 123456789 2
The 123456789 2 represents an account number, this is how I identify the duplicate record.
The ### signs represent... (4 Replies)
Hi....I need one help....
I'm having a files which is having the data as follows...
a
b
c c
d d d
e
f
Now I need to find out distinct characters from this file and the output should be as follows -
a
b
c
d
e
f
Can you please help me on this? I'm using KSH script. (18 Replies)
Hi all,
I have a issues while loading a flat file to the DB. It is taking much time.
When analyzed i found out that there are duplicates entry in the flat file.
There are 2 type of Duplicate entry.
1) is entire row is duplicate. ( i can use sort | uniq) to remove the duplicated entry.
2) the... (4 Replies)
We have a flat file with below data :
^@^@^@^@00000305^@^@^@^@^@^@430^@430^@^@^@^@^@^@^@^@^@09079989530As we can see ^@ is Null character in this file
I want to remove only the first few null characters before string 00000305
How can we do that, any idea. I want a new file without first few... (5 Replies)
Discussion started by: simpltyansh
5 Replies
LEARN ABOUT DEBIAN
bp_bioflat_index
BP_BIOFLAT_INDEX(1p) User Contributed Perl Documentation BP_BIOFLAT_INDEX(1p)NAME
bioflat_index.pl - index sequence files using Bio::DB::Flat
DESCRIPTION
Create or update a biological sequence database indexed with the
Bio::DB::Flat indexing scheme. The arguments are a list of flat files
containing the sequence information to be indexed.
USAGE
bioflat_index.pl <options> file1 file2 file3...
Options:
--create Create or reinitialize the index. If not specified,
the index must already exist.
--format <format> The format of the sequence files. Must be one
of "genbank", "swissprot", "embl" or "fasta".
--location <path> Path to the directory in which the index files
are stored.
--dbname <name> The symbolic name of the database to be created.
--indextype <type> Type of index to create. Either "bdb" or "flat".
"binarysearch" is the same as "flat".
Options can be abbreviated. For example, use -i for --indextype.
The following environment variables will be used as defaults if the corresponding options are not provided:
OBDA_FORMAT format of sequence file
OBDA_LOCATION path to directory in which index files are stored
OBDA_DBNAME name of database
OBDA_INDEX type of index to create
perl v5.14.2 2012-03-02 BP_BIOFLAT_INDEX(1p)