Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Hello;
I have a file consists of 4 columns separated by tab. The problem is the third fields. Some of the them are very long but can be split by the vertical bar "|". Also some of them do not contain the string "UniProt", but I could ignore it at this moment, and sort the file afterwards. Here is... (5 Replies)
Hey,
I'm sure this is answered somewhere but my Googling has turned up nothing. I have a file with data in the following format:
<desription of event> at <time and date>The desription of the event is variable length and hence when the list is displayed it is hard to easily see the date (and... (8 Replies)
Hi..
May be a simple question but I just began to write unix scripts a week ago, for sorting some huge amount of experiment data, so I got no common sense about unix scripting and really need your helps...
The situation is, I want to read the nth word of mth line in a file, and then store it... (3 Replies)
Hi experts,
I need to print the first field first then last two fields should come next and then i need to print rest of the fields.
Input :
a1,abc,jsd,fhf,fkk,b1,b2
a2,acb,dfg,ghj,b3,c4
a3,djf,wdjg,fkg,dff,ggk,d4,d5
Expected output:
a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
Hi,
i need to remove mth and nth column from a csv file. here m and n is not a specific number. it is a variable
ex.
m=2
n=5
now i need to remove the 2nd and 5th line.. Please help how to do that.
Thanks!!! (18 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
PS003,001... (4 Replies)
Discussion started by: jvoot
4 Replies
LEARN ABOUT DEBIAN
prophet::test
Prophet::Test(3pm) User Contributed Perl Documentation Prophet::Test(3pm)
set_editor($code)
Sets the subroutine that Prophet should use instead of "Prophet::CLI::Command::edit_text" (as this routine invokes an interactive editor)
to $code.
set_editor_script SCRIPT
Sets the editor that Proc::InvokeEditor uses.
This should be a non-interactive script found in t/scripts.
import_extra($class, $args)
in_gladiator($code)
Run the given code using Devel::Gladiator.
repo_path_for($username)
Returns a path on disk for where $username's replica is stored.
repo_uri_for($username)
Returns a file:// URI for $USERNAME'S replica (with the correct replica type prefix).
replica_uuid
Returns the UUID of the test replica.
database_uuid
Returns the UUID of the test database.
replica_last_rev
Returns the sequence number of the last change in the test replica.
as_user($username, $coderef)
Run this code block as $username. This routine sets up the %ENV hash so that when we go looking for a repository, we get the user's repo.
replica_uuid_for($username)
Returns the UUID of the given user's test replica.
database_uuid_for($username)
Returns the UUID of the given user's test database.
ok_added_revisions( { CODE }, $numbers_of_new_revisions, $msg)
Checks that the given code block adds the given number of changes to the test replica. $msg is optional and will be printed with the test
if given.
serialize_conflict($conflict_obj)
Returns a simple, serialized version of a Prophet::Conflict object suitable for comparison in tests.
The serialized version is a hash reference containing the following keys:
meta => { original_source_uuid => 'source_replica_uuid' }
records => { 'record_uuid' =>
{ change_type => 'type',
props => { propchange_name => { source_old => 'old_val',
source_new => 'new_val',
target_old => 'target_val',
}
}
},
'another_record_uuid' =>
{ change_type => 'type',
props => { propchange_name => { source_old => 'old_val',
source_new => 'new_val',
target_old => 'target_val',
}
}
},
}
serialize_changeset($changeset_obj)
Returns a simple, serialized version of a Prophet::ChangeSet object suitable for comparison in tests (a hash).
run_command($command, @args)
Run the given command with (optionally) the given args using a new Prophet::CLI object. Returns the standard output of that command in
scalar form or, in array context, the STDOUT in scalar form *and* the STDERR in scalar form.
Examples:
run_command('create', '--type=Foo');
load_record($type, $uuid)
Loads and returns a record object for the record with the given type and uuid.
as_alice CODE, as_bob CODE, as_charlie CODE, as_david CODE
Runs CODE as alice, bob, charlie or david.
perl v5.10.1 2009-09-02 Prophet::Test(3pm)