Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Hello;
I have a file consists of 4 columns separated by tab. The problem is the third fields. Some of the them are very long but can be split by the vertical bar "|". Also some of them do not contain the string "UniProt", but I could ignore it at this moment, and sort the file afterwards. Here is... (5 Replies)
Hey,
I'm sure this is answered somewhere but my Googling has turned up nothing. I have a file with data in the following format:
<desription of event> at <time and date>The desription of the event is variable length and hence when the list is displayed it is hard to easily see the date (and... (8 Replies)
Hi..
May be a simple question but I just began to write unix scripts a week ago, for sorting some huge amount of experiment data, so I got no common sense about unix scripting and really need your helps...
The situation is, I want to read the nth word of mth line in a file, and then store it... (3 Replies)
Hi experts,
I need to print the first field first then last two fields should come next and then i need to print rest of the fields.
Input :
a1,abc,jsd,fhf,fkk,b1,b2
a2,acb,dfg,ghj,b3,c4
a3,djf,wdjg,fkg,dff,ggk,d4,d5
Expected output:
a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
Hi,
i need to remove mth and nth column from a csv file. here m and n is not a specific number. it is a variable
ex.
m=2
n=5
now i need to remove the 2nd and 5th line.. Please help how to do that.
Thanks!!! (18 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
PS003,001... (4 Replies)
Discussion started by: jvoot
4 Replies
LEARN ABOUT MOJAVE
io::digest
IO::Digest(3) User Contributed Perl Documentation IO::Digest(3)NAME
IO::Digest - Calculate digests while reading or writing
SYNOPSIS
use IO::Digest;
# Get a Digest::MD5 object that takes input while $fh being written or read
my $fh;
my $iod = IO::Digest->new ($fh, 'MD5');
print $fh "fooo";
print $iod->hexdigest
DESCRIPTION
This module allows you to calculate digests while reading or writing file handles. This avoids the case you need to reread the same
content to compute the digests after written a file.
TEST COVERAGE ----------------------------------- ------ ------ ------ ------ ------ ------
File stmt branch cond sub time total
----------------------------------- ------ ------ ------ ------ ------ ------
blib/lib/IO/Digest.pm 100.0 n/a n/a 100.0 100.0 100.0
Total 100.0 n/a n/a 100.0 100.0 100.0
----------------------------------- ------ ------ ------ ------ ------ ------
AUTHORS
Chia-liang Kao <clkao@clkao.org>
COPYRIGHT
Copyright 2004 by Chia-liang Kao <clkao@clkao.org>.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
See <http://www.perl.com/perl/misc/Artistic.html>
perl v5.18.2 2013-02-16 IO::Digest(3)