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Top Forums Web Development Website construction nowaday! Post 302600340 by z1dane on Monday 20th of February 2012 11:37:11 PM
Old 02-21-2012
Quote:
Originally Posted by yifangt
Thank Neo!
I am learning bioinformatics which would include mainly static webpage plus some online programs using local databases with MySQL. I am only a beginner and confused very much with those choices such as PHP-MySQL-Apache, Wordpress, Drupal, HTML/CSS etc. Also perl-script or Javascript are choices, but I was told perl-script is out of date.
I am familiar with Linux (Ubuntu), Perl and MySQL, and some idea with PHP-Apache, HTML, so that I posted my question to ask some suggestions from experts to save my struggling and focus my self on specific bundle before getting lost.
Thanks again! Yifang
Hi Yifang,

I guess you're looking at lower level server side stuff. Have a look at http://en.wikipedia.org/wiki/LAMP_(software_bundle). HTML/CSS/Javascript are all client side, and they are used for making a website more pleasant. As you've probably observed most websites hosting bioinformatic tools focus more on the function and not so much on aesthetics.

I've built simple laboratory information management system using LAMP (P for Perl) and it worked well. If you choose to stick with Perl, learn the DBI and CGI Perl modules and mod_perl for Apache. You can build extremely useful tools. As for the appearance, I just downloaded some freely HTML/CSS templates and made my own modifications.

I know people who work in bioinformatics that are switching towards Python from Perl and the Python bioinformatics community is growing. They claim the code is much more readable and more understandable. But I've been still sticking with Perl.

As for high-end stuff, I've used Wordpress and Drupal, and I prefer Wordpress. Just try it for yourself.

Dave
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PPI::HTML(3)						User Contributed Perl Documentation					      PPI::HTML(3)

NAME
PPI::HTML - Generate syntax-hightlighted HTML for Perl using PPI SYNOPSIS
use PPI; use PPI::HTML; # Load your Perl file my $Document = PPI::Document->load( 'script.pl' ); # Create a reusable syntax highlighter my $Highlight = PPI::HTML->new( line_numbers => 1 ); # Spit out the HTML print $Highlight->html( $Document ); DESCRIPTION
PPI::HTML converts Perl documents into syntax highlighted HTML pages. HISTORY
PPI::HTML is the successor to the now-redundant PPI::Format::HTML. While early on it was thought that the same formatting code might be able to be used for a variety of different types of things (ANSI and HTML for example) later developments with the here-doc code and the need for independantly written serializers meant that this idea had to be discarded. In addition, the old module only made use of the Tokenizer, and had a pretty shit API to boot. API Overview The new module is much cleaner. Simply create an object with the options you want, pass PPI::Document objects to the "html" method, and you get strings of HTML that you can do whatever you want with. METHODS
new %args The "new" constructor takes a simple set of key/value pairs to define the formatting options for the HTML. page Is the "page" option is enabled, the generator will wrap the generated HTML fragment in a basic but complete page. line_numbers At the present time, the only option available. If set to true, line numbers are added to the output. colors | colours For cases where you don't want to use an external stylesheet, you can provide "colors" as a hash reference where the keys are CSS classes (generally matching the token name) and the values are colours. This allows basic colouring without the need for a whole stylesheet. css The "css" option lets you provide a custom CSS::Tiny object containing any CSS you want to apply to the page (if you are using page mode). If both the "colors" and "css" options are used, the colour CSS entries will overwrite anything contained in the CSS::Tiny object. The object will also be cloned if it to be modified, to prevent destroying any CSS objects passed in. Returns a new PPI::HTML object css The "css" accessor returns the CSS::Tiny object originally provided to the constructor. html $Document | $file | $source The main method for the class, the "html" method takes a single PPI::Document object, or anything that can be turned into a PPI::Document via its "new" method, and returns a string of HTML formatted based on the arguments given to the "PPI::HTML" constructor. Returns a string, or "undef" on error. SUPPORT
Bugs should always be submitted via the CPAN bug tracker <http://rt.cpan.org/NoAuth/ReportBug.html?Queue=PPI-HTML> For other issues, contact the maintainer AUTHOR
Adam Kennedy <adamk@cpan.org> Funding provided by The Perl Foundation SEE ALSO
<http://ali.as/>, PPI COPYRIGHT
Copyright 2005 - 2009 Adam Kennedy. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. The full text of the license can be found in the LICENSE file included with this module. perl v5.16.3 2009-11-16 PPI::HTML(3)
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