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Top Forums Web Development Website construction nowaday! Post 302600340 by z1dane on Monday 20th of February 2012 11:37:11 PM
Old 02-21-2012
Quote:
Originally Posted by yifangt
Thank Neo!
I am learning bioinformatics which would include mainly static webpage plus some online programs using local databases with MySQL. I am only a beginner and confused very much with those choices such as PHP-MySQL-Apache, Wordpress, Drupal, HTML/CSS etc. Also perl-script or Javascript are choices, but I was told perl-script is out of date.
I am familiar with Linux (Ubuntu), Perl and MySQL, and some idea with PHP-Apache, HTML, so that I posted my question to ask some suggestions from experts to save my struggling and focus my self on specific bundle before getting lost.
Thanks again! Yifang
Hi Yifang,

I guess you're looking at lower level server side stuff. Have a look at http://en.wikipedia.org/wiki/LAMP_(software_bundle). HTML/CSS/Javascript are all client side, and they are used for making a website more pleasant. As you've probably observed most websites hosting bioinformatic tools focus more on the function and not so much on aesthetics.

I've built simple laboratory information management system using LAMP (P for Perl) and it worked well. If you choose to stick with Perl, learn the DBI and CGI Perl modules and mod_perl for Apache. You can build extremely useful tools. As for the appearance, I just downloaded some freely HTML/CSS templates and made my own modifications.

I know people who work in bioinformatics that are switching towards Python from Perl and the Python bioinformatics community is growing. They claim the code is much more readable and more understandable. But I've been still sticking with Perl.

As for high-end stuff, I've used Wordpress and Drupal, and I prefer Wordpress. Just try it for yourself.

Dave
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Session::Flex(3)					User Contributed Perl Documentation					  Session::Flex(3)

NAME
Apache::Session::Flex - Specify everything at runtime SYNOPSIS
use Apache::Session::Flex; tie %hash, 'Apache::Session::Flex', $id, { Store => 'DB_File', Lock => 'Null', Generate => 'MD5', Serialize => 'Storable' }; # or tie %hash, 'Apache::Session::Flex', $id, { Store => 'Postgres', Lock => 'Null', Generate => 'MD5', Serialize => 'Base64' }; # you decide! DESCRIPTION
This module is an implementation of Apache::Session. Unlike other implementations, it allows you to specify the backing store, locking scheme, ID generator, and data serializer at runtime. You do this by passing arguments in the usual Apache::Session style (see SYNOPSIS). You may use any of the modules included in this distribution, or a module of your own making. If you wish to use a module of your own making, you should make sure that it is available under the Apache::Session package namespace. USAGE
You pass the modules you want to use as arguments to the constructor. The Apache::Session::Whatever part is appended for you: you should not supply it. For example, if you wanted to use MySQL as the backing store, you should give the argument "Store =" 'MySQL'>, and not "Store =" 'Apache::Session::Store::MySQL'>. There are four modules that you need to specify. Store is the backing store to use. Lock is the locking scheme. Generate is the ID generation module. Serialize is the data serialization module. There are many modules included in this distribution. For each role, they are: Store: MySQL Postgres DB_File File Lock: Null MySQL Semaphore Generate: MD5 Serialize: Storable Base64 UUEncode In addition to the arguments needed by this module, you must provide whatever arguments are expected by the backing store and lock manager that you are using. Please see the documentation for those modules. AUTHOR
This module was written by Jeffrey William Baker <jwbaker@acm.org>. SEE ALSO
Apache::Session::File, Apache::Session::DB_File, Apache::Session::MySQL, Apache::Session::Postgres, Apache::Session perl v5.12.1 2007-09-28 Session::Flex(3)
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