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Top Forums Web Development Website construction nowaday! Post 302600340 by z1dane on Monday 20th of February 2012 11:37:11 PM
Old 02-21-2012
Quote:
Originally Posted by yifangt
Thank Neo!
I am learning bioinformatics which would include mainly static webpage plus some online programs using local databases with MySQL. I am only a beginner and confused very much with those choices such as PHP-MySQL-Apache, Wordpress, Drupal, HTML/CSS etc. Also perl-script or Javascript are choices, but I was told perl-script is out of date.
I am familiar with Linux (Ubuntu), Perl and MySQL, and some idea with PHP-Apache, HTML, so that I posted my question to ask some suggestions from experts to save my struggling and focus my self on specific bundle before getting lost.
Thanks again! Yifang
Hi Yifang,

I guess you're looking at lower level server side stuff. Have a look at http://en.wikipedia.org/wiki/LAMP_(software_bundle). HTML/CSS/Javascript are all client side, and they are used for making a website more pleasant. As you've probably observed most websites hosting bioinformatic tools focus more on the function and not so much on aesthetics.

I've built simple laboratory information management system using LAMP (P for Perl) and it worked well. If you choose to stick with Perl, learn the DBI and CGI Perl modules and mod_perl for Apache. You can build extremely useful tools. As for the appearance, I just downloaded some freely HTML/CSS templates and made my own modifications.

I know people who work in bioinformatics that are switching towards Python from Perl and the Python bioinformatics community is growing. They claim the code is much more readable and more understandable. But I've been still sticking with Perl.

As for high-end stuff, I've used Wordpress and Drupal, and I prefer Wordpress. Just try it for yourself.

Dave
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Apache::Session::Lock::MySQL(3pm)			User Contributed Perl Documentation			 Apache::Session::Lock::MySQL(3pm)

NAME
Apache::Session::Lock::MySQL - Provides mutual exclusion using MySQL SYNOPSIS
use Apache::Session::Lock::MySQL; my $locker = Apache::Session::Lock::MySQL->new(); $locker->acquire_read_lock($ref); $locker->acquire_write_lock($ref); $locker->release_read_lock($ref); $locker->release_write_lock($ref); $locker->release_all_locks($ref); DESCRIPTION
Apache::Session::Lock::MySQL fulfills the locking interface of Apache::Session. Mutual exclusion is achieved through the use of MySQL's GET_LOCK and RELEASE_LOCK functions. MySQL does not support the notion of read and write locks, so this module only supports exclusive locks. When you request a shared read lock, it is instead promoted to an exclusive write lock. CONFIGURATION
The module must know how to connect to your MySQL database to acquire locks. You must provide a datasource name, a user name, and a password. These options are passed in the usual Apache::Session style, and are very similar to the options for Apache::Session::Store::MySQL. Example: tie %hash, 'Apache::Session::MySQL', $id, { LockDataSource => 'dbi:mysql:database', LockUserName => 'database_user', LockPassword => 'K00l' }; Instead, you may pass in an already opened DBI handle to your database. tie %hash, 'Apache::Session::MySQL', $id, { LockHandle => $dbh }; AUTHOR
This module was written by Jeffrey William Baker <jwbaker@acm.org>. SEE ALSO
Apache::Session perl v5.10.1 2010-10-18 Apache::Session::Lock::MySQL(3pm)
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