Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Merge rows with common column Post 302600138 by AAWT on Monday 20th of February 2012 07:31:27 AM
Old 02-20-2012
Merge rows with common column

Dear all
I have big file with two columns
Code:
         A_AA960715   GO:0006952        
A_AA960715   GO:0008152 
        A_AA960715   GO:0016491         
A_AA960715   GO:0007165         
A_AA960715   GO:0005618 
        A_AA960716   GO:0006952        
A_AA960716   GO:0005618         
A_AA960716   GO:0055114         
A_AA960716   GO:0032440         
A_AA960716   GO:0016023         
A_AA960716   GO:0016310

and I need to have output file
Code:
         A_AA960715    GO:0006952   GO:0008152    GO:0016491    GO:0007165    GO:0005618    
  
       A_AA960716     GO:0006952   GO:0005618    GO:0055114    GO:0032440    GO:0016023    GO:0016310    GO:0016301    GO:0007165

I already tried the commands given by Otheus but it didn't work for me,
please help me urgently

Regards

Last edited by Scott; 02-20-2012 at 09:29 AM.. Reason: Code tags
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

merge rows based on a common column

Hi guys, Please guide me if you have a solution to this problem. I have tried paste -s but it's not giving the desired output. I have a file with the following content- A123 box1 B345 bat2 C431 my_id A123 service C431 box1 A123 my_id I need two different outputs- OUTPUT1 A123... (6 Replies)
Discussion started by: smriti_shridhar
6 Replies

2. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

3. UNIX for Dummies Questions & Answers

Writing a loop to merge multiple files by common column

I have 100 data files labelled 250.1.txt through 250.100.txt. The second column of the data files partially match (there is about %90 overlap). Each data file has 4 columns. I want the merge all these text files by the matching values in the second column. In the output, the first column should... (1 Reply)
Discussion started by: evelibertine
1 Replies

4. UNIX for Dummies Questions & Answers

Merge two files with common IDs but unequal number of rows

Hi, I have two files that I would like to merge and think that there should be a solution using awk. The files look something like this: file 1 IDX1 IDY1 IDX2 IDY2 IDX3 IDY3 file 2 IDY1 dataA data1 IDY2 dataB data2 IDY3 dataC data3 Desired output IDX1 IDY1 dataA data1 IDX2 ... (5 Replies)
Discussion started by: katie8856
5 Replies

5. Shell Programming and Scripting

How to merge multiple rows into single row if first column matches ?

Hi, Can anyone suggest quick way to get desired output? Sample input file content: A 12 9 A -0.3 2.3 B 1.0 -4 C 34 1000 C -111 900 C 99 0.09 Output required: A 12 9 -0.3 2.3 B 1.0 -4 C 34 1000 -111 900 99 0.09 Thanks (3 Replies)
Discussion started by: cbm_000
3 Replies

6. Shell Programming and Scripting

Merging rows using two common rows.

Hi.. My requirement is simple but unable to get that.. File 1 : 3 415 A G 4 421 G . 39 421 G A 2 421 G A,C 41 427 A . 4 427 A C 42 436 G . 3 436 G C 43 445 C . 2 445 C T 41 447 A . Output (4 Replies)
Discussion started by: empyrean
4 Replies

7. Shell Programming and Scripting

Count and merge using common column

I have the following records from multiple files. 415 A G 415 A G 415 A T 415 A . 415 A . 421 G A 421 G A,C 421 G A 421 G A 421 G A,C 421 G . 427 A C 427 A ... (3 Replies)
Discussion started by: empyrean
3 Replies

8. Shell Programming and Scripting

Merge with common column

hi i have two files and i wanted to join them using common column. try to do this using "join" command but that did not help. File 1: 123 9a.vcf hy92.vcf hy90.vcf Index Ref Alt Ref Alt Ref Alt 315 14 0 7 4 ... (6 Replies)
Discussion started by: empyrean
6 Replies

9. Shell Programming and Scripting

Merge files based on both common and uncommon rows

Hi, I have two files A (2190 rows) and file B (1100 rows). I want to merge the contents of two files based on common field, also I need the unmatched rows from file A file A: ABC XYZ PQR file B: >LMN|chr1:11000-12456: >ABC|chr15:176578-187678: >PQR|chr3:14567-15866: output... (3 Replies)
Discussion started by: Diya123
3 Replies

10. Shell Programming and Scripting

Seperated by columns, merge in a file, sort them on common column

Hi All, I have 4 files in below format. I took them as an example. File 1: Cut from position 1-4 then 6-7 then 8-14 then rest left and make them as columns in one new file. Inserting character H to the initial of all line like HCTOT. CTOT 456787897 Low fever CTOR 556712345 High fever... (2 Replies)
Discussion started by: Mannu2525
2 Replies
Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME
Locale::Codes::LangFam - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangFam; $lext = code2langfam('apa'); # $lext gets 'Apache languages' $code = langfam2code('Apache languages'); # $code gets 'apa' @codes = all_langfam_codes(); @names = all_langfam_names(); DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in ISO 639-5. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5 language family codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langfam('apa','alpha'); $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages. This is the default code set. ROUTINES
code2langfam ( CODE [,CODESET] ) langfam2code ( NAME [,CODESET] ) langfam_code2code ( CODE ,CODESET ,CODESET2 ) all_langfam_codes ( [CODESET] ) all_langfam_names ( [CODESET] ) Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] ) Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME ) Locale::Codes::LangFam::delete_langfam_alias ( NAME ) Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.loc.gov/standards/iso639-5/id.php ISO 639-5 . AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangFam(3pm)
All times are GMT -4. The time now is 10:53 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy