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Top Forums Shell Programming and Scripting Converting entries from rows to column Post 302599333 by atulkakrana on Thursday 16th of February 2012 09:01:51 PM
Old 02-16-2012
Data Converting entries from rows to column

Hi all,

I need your help on a multiple row entry into different columns. And do the same with all the entries in file.

File example (showing 2 entries only, there are many like these):
Code:
>ABC
*
AGA-AUUCUC-CGGUUCAAUCU
|||
UCUAUAACCGCGCCGAGUUAGU

>ABC
*
AGAUAU-GCUGCAGGCUCAAUUG
||||||
UCUAUAACCGCG-CCGAGUUAGU

File required:
Code:
>ABC AGA-AUUCUC-CGGUUCAAUCU UCUAUAACCGCGCCGAGUUAGU
>ABC AGAUAU-GCUGCAGGCUCAAUUG UCUAUAACCGCG-CCGAGUUAGU

I am able to convert single entry into required format by:

HTML Code:
tr '\n' '\t' <test3 | awk '{print $1,$3,$5}'
But don't know how to do it with all entries by reading whole file.

Please help me with the code-required urgently

AK

Last edited by Franklin52; 02-17-2012 at 03:35 AM.. Reason: Please use code tags for code and data samples, thank you
 

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VOS_LISTADDRS(1)					       AFS Command Reference						  VOS_LISTADDRS(1)

NAME
vos_listaddrs - Displays all VLDB server entries SYNOPSIS
vos listaddrs [-uuid <uuid of server>] [-host <address of host>] [-printuuid] [-cell <cell name>] [-noauth] [-localauth] [-verbose] [-encrypt] [-noresolve] [-help] vos lista [-u <uuid of server>] >>> [-h <address of host>] [-p] [-c <cell name>] [-noa] [-l] [-v] [-e] [-nor] [-he] DESCRIPTION
The vos listaddrs command displays all of the server entries from the Volume Location Database (VLDB). An entry is created as the File Server initializes and registers the contents of its /var/lib/openafs/local/sysid file in the VLDB. OPTIONS
-host <address of host> Rather than displaying all the server entries, display only server entries for the specified host. This will show all multihomed addresses registered by that File Server in the VLDB. -uuid <uuid of server> Rather than displaying all the server entries, display only server entries for the File Server with the specified UUID. This will show all multihomed addresses registered by that File Server in the VLDB and also allows mapping a File Server UUID to its address. -printuuid Prints the UUID of server entries in addition to the registered addresses. The -printuuid option is available in OpenAFS versions 1.4.5 or later and 1.5.8 or later. -cell <cell name> Names the cell in which to run the command. Do not combine this argument with the -localauth flag. For more details, see vos(1). -noauth Assigns the unprivileged identity anonymous to the issuer. Do not combine this flag with the -localauth flag. For more details, see vos(1). -localauth Constructs a server ticket using a key from the local /etc/openafs/server/KeyFile file. The vos command interpreter presents it to the Volume Server and Volume Location Server during mutual authentication. Do not combine this flag with the -cell argument or -noauth flag. For more details, see vos(1). -verbose Produces on the standard output stream a detailed trace of the command's execution. If this argument is omitted, only warnings and error messages appear. -encrypt Encrypts the command so that the operation's results are not transmitted across the network in clear text. This option is available in OpenAFS versions 1.4.11 or later and 1.5.60 or later. -noresolve Shows all servers as IP addresses instead of the DNS name. This is very useful when the server address is registered as 127.0.0.1 or when dealing with multi-homed servers. This option is available in OpenAFS versions 1.4.8 or later and 1.5.35 or later. -help Prints the online help for this command. All other valid options are ignored. OUTPUT
The output displays all server entries from the VLDB, each on its own line. If a file server machine is multihomed, all of its registered addresses appear on the line. The first one is the one reported as a volume's site in the output from the vos examine and vos listvldb commands. The VLDB records IP addresses, and the command interpreter has the local name service (either a process like the Domain Name Service or a local host table) translate them to hostnames before displaying them. If an IP address appears in the output, it is not possible to translate it. The existence of an entry does not necessarily indicate that the machine that is still an active file server machine. To remove obsolete server entries, use the vos changeaddr command with the -remove argument. EXAMPLES
The following command displays the VLDB server entries in the ABC Corporation cell: % vos listaddrs sv5.abc.com sv1.abc.com sv2.abc.com afs2.abc.com sv6.abc.com The following command displays the VLDB server entry and UUID for host sv5.abc.com in the ABC Corporation cell: % vos listaddrs -p -ho sv5.abc.com UUID: 000c5aff-8246-1699-96-c4-437b5a45aa77 sv5.abc.com PRIVILEGE REQUIRED
None SEE ALSO
fs_uuid(1), sysid(5), vos(1), vos_changeaddr(1), vos_examine(1), vos_listvldb(1) COPYRIGHT
IBM Corporation 2000. <http://www.ibm.com/> All Rights Reserved. This documentation is covered by the IBM Public License Version 1.0. It was converted from HTML to POD by software written by Chas Williams and Russ Allbery, based on work by Alf Wachsmann and Elizabeth Cassell. OpenAFS 2012-03-26 VOS_LISTADDRS(1)
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