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Top Forums Shell Programming and Scripting Using AWK to match CSV files with duplicate patterns Post 302597294 by isuewing on Thursday 9th of February 2012 11:54:00 PM
Old 02-10-2012
Using AWK to match CSV files with duplicate patterns

Dear awk users,

I am trying to use awk to match records across two moderately large CSV files. File1 is a pattern file with 173,200 lines, many of which are repeated. The order in which these lines are displayed is important, and I would like to preserve it. File2 is a data file with 456,000 unique lines.

File1.csv:
Code:
_Year01
23_01_192001
23_02_192001
23_01_192001
23_04_192001
23_05_192001
23_03_192001
23_02_192001
23_03_192001
23_05_192001
23_04_192001
23_05_192001
23_05_192001
23_06_192001
_192001
25_01_192001
25_02_192001
...

File2.csv:
Code:
23,01,192001,0.09,23.40,-0.79,0.,1252.,23_01_192001
23,03,192001,0.79,28.30,-0.63,0.,1110.,23_03_192001
23,04,192002,0.15,37.40,-0.98,0.,748.,23_04_192002
23,06,192002,1.42,38.70,2.78,0.,720.,23_06_192002
23,03,192002,0.54,34.30,-1.05,0.,832.,23_03_192002
23,02,192002,0.54,31.50,-1.04,0.,918.,23_02_192002
23,01,192002,0.77,30.60,-0.82,0.,935.,23_01_192002
23,05,192002,0.65,36.30,-1.00,0.,784.,23_05_192002
23,04,192003,5.18,45.10,0.58,6.,595.,23_04_192003
23,02,192003,5.24,42.30,0.94,0.,682.,23_02_192003

I want to extract the lines in File2 for which column 9 matches the alphanumeric key in File 1, preserving the key order in the latter file. After reading several posts on this and other forums, I tried:
Code:
awk -F\, 'FNR==NR{a[$1]=$9;next}{print $0, a[$1]}' File1.csv File2.csv

which just prints out File2.csv, and

Code:
awk -F\, 'FNR==NR{a[$1]=$9;next}$9 in a' File1.csv File2.csv


which generates results in the wrong order.

I realize this type of question is a simple and well-documented. I thought I had correctly grasped the logic of the program, but apparently I have not. I would be very grateful for pointers as to where I am going wrong.

-i


Last edited by Franklin52; 02-10-2012 at 04:03 AM.. Reason: Please use code tags for code and data samples, thank you
 

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CSV(3pm)						User Contributed Perl Documentation						  CSV(3pm)

NAME
Class::CSV - Class based CSV parser/writer SYNOPSIS
use Class::CSV; my $csv = Class::CSV->parse( filename => 'test.csv', fields => [qw/item qty sub_total/] ); foreach my $line (@{$csv->lines()}) { $line->sub_total('$'. sprintf("%0.2f", $line->sub_total())); print 'Item: '. $line->item(). " ". 'Qty: '. $line->qty(). " ". 'SubTotal: '. $line->sub_total(). " "; } my $cvs_as_string = $csv->string(); $csv->print(); my $csv = Class::CSV->new( fields => [qw/userid username/], line_separator => " "; ); $csv->add_line([2063, 'testuser']); $csv->add_line({ userid => 2064, username => 'testuser2' }); DESCRIPTION
This module can be used to create objects from CSV files, or to create CSV files from objects. Text::CSV_XS is used for parsing and creating CSV file lines, so any limitations in Text::CSV_XS will of course be inherant in this module. EXPORT None by default. METHOD
CONSTRUCTOR parse the parse constructor takes a hash as its paramater, the various options that can be in this hash are detailed below. Required Options o fields - an array ref containing the list of field names to use for each row. there are some reserved words that cannot be used as field names, there is no checking done for this at the moment but it is something to be aware of. the reserved field names are as follows: "string", "set", "get". also field names cannot contain whitespace or any characters that would not be allowed in a method name. Source Options (only one of these is needed) o filename - the path of the CSV file to be opened and parsed. o filehandle - the file handle of the CSV file to be parsed. o objects - an array ref of objects (e.g. Class::DBI objects). for this to work properly the field names provided in fields needs to correspond to the field names of the objects in the array ref. o classdbi_objects - depreciated use objects instead - using classdbi_objects will still work but its advisable to update your code. Optional Options o line_separator - the line seperator to be included at the end of every line. defaulting to " " (unix carriage return). new the new constructor takes a hash as its paramater, the same options detailed in parse apply to new however no Source Options can be used. this constructor creates a blank CSV object of which lines can be added via add_line. ACCESSING lines returns an array ref containing objects of each CSV line (made via Class::Accessor). the field names given upon construction are available as accessors and can be set or get. for more information please see the notes below or the perldoc for Class::Accessor. the lines accessor is also able to be updated/retrieved in the same way as individual lines fields (examples below). Example retrieving the lines: my @lines = @{$csv->lines()}; removing the first line: pop @lines; $csv->lines(@lines); sorting the lines: @lines = sort { $a->userid() <=> $b->userid() } @lines: $csv->lines(@lines); sorting the lines (all-in-one way): $csv->lines([ sort { $a->userid() <=> $b->userid() } @{$csv->lines()} ]); Retrieving a fields value there is two ways to retrieve a fields value (as documented in Class::Accessor). firstly you can call the field name on the object and secondly you can call "get" on the object with the field name as the argument (multiple field names can be specified to retrieve an array of values). examples are below. my $value = $line->test(); OR my $value = $line->get('test'); OR my @values = $line->get(qw/test test2 test3/); Setting a fields value setting a fields value is simmilar to getting a fields value. there are two ways to set a fields value (as documented in Class::Accessor). firstly you can simply call the field name on the object with the value as the argument or secondly you can call "set" on the object with a hash of fields and their values to set (this isn't standard in Class::Accessor, i have overloaded the "set" method to allow this). examples are below. $line->test('123'); OR $line->set( test => '123' ); OR $line->set( test => '123', test2 => '456' ); Retrieving a line as a string to retrieve a line as a string simply call "string" on the object. my $string = $line->string(); new_line returns a new line object, this can be useful for to "splice" a line into lines (see example below). you can pass the values of the line as an ARRAY ref or a HASH ref. Example my $line = $csv->new_line({ userid => 123, domainname => 'splicey.com' }); my @lines = $csv->lines(); splice(@lines, 1, 0, $line); OR splice(@{$csv->lines()}, 1, 0, $csv->new_line({ userid => 123, domainname => 'splicey.com' })); add_line adds a line to the lines stack. this is mainly useful when the new constructor is used but can of course be used with any constructor. it will add a new line to the end of the lines stack. you can pass the values of the line as an ARRAY ref or a HASH ref. examples of how to use this are below. Example $csv->add_line(['house', 100000, 4]); $csv->add_line({ item => 'house', cost => 100000, bedrooms => 4 }); OUTPUT string returns the object as a string (CSV file format). print calls "print" on string (prints the CSV to STDOUT). SEE ALSO
Text::CSV_XS, Class::Accessor AUTHOR
David Radunz, <david@boxen.net> COPYRIGHT AND LICENSE
Copyright 2004 by David Radunz This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.10.0 2007-02-08 CSV(3pm)
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