I am trying to remove the tab character from a file, which occurs on two places in every line. So far I have tried the following and most are from threads in this forum:
I am using csh, so perhaps that is one of the reasons why none of these commands work. Is there a different command I should try?
I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi Experts,
I have data coming in 4 columns and there are new line characters \n in between the data. I need to remove the new line characters in the middle of the row and keep the \n character at the end of the line.
File is comma (,) seperated.
Eg:
ID,Client ,SNo,Rank
37,Airtel \n... (8 Replies)
Hi All
Please help me to remove the first 2 character from the file name.
files are like this
$ ls
12aman file
13atul si
56rana se
I want to remove the first 2 char which are numbers.
I want the o/p like thus
aman file
atul si
rana se (8 Replies)
I receive a file which is Dos format. When I view the file using vi, I was able to find ^M, ^@ characters in beteen records. I wanted to remove these control/special characters. I used the dos2unix command. This removed the ^M characters. But I am unable to remove the ^@ character. I tried even the... (6 Replies)
Hello,
I need to remove ^L character from a file as below:
HELLO "I "
HELLO "I "
^L HELLO "I"
HELLO "I "
HELLO "I "
Please suggest.
Thanks !!
Please use next time code tags for your code and data (9 Replies)
Good afternoon:
im working wih 2 files to find differences and use the cmp command
cmp file1 file2
file1 file2 are are diifferent char 302 line1
i found what the difference is with the sed command and that is the file1 at the end of every line has a (,) (comma) character.
i.e
sed -n... (4 Replies)
Thank you for 4 looking this post.
We have a tab delimited file where we are facing problem in a lot of funny character. I have tried using awk but failed that is not working.
In the 5th field ID which is supposed to be a integer only of that file, we are getting corrupted data as below.
I... (12 Replies)
Hello,
I have some tab delimited files that may contain blank columns. I would like to delete the blank columns if they exist. There is no clear pattern for when a blank occurs.
I was thinking of using sed to replace instances of double tab with blank,
sed 's/\t\t//g'
All of the examples... (2 Replies)
I have a file which comes every day and the file data look's as below.
Vi abc.txt
a|b|c|d\n
a|g|h|j\n
Some times we receive the file with only a new line character in the file like
vi abc.txt
\n (8 Replies)
Discussion started by: rak Kundra
8 Replies
LEARN ABOUT SUNOS
unknown
UNKNOWN(1) General Commands Manual UNKNOWN(1)NAME
unknown - identify possible genotypes for unknowns
SYNOPSIS
A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree.
unknown [ -cl ]
DESCRIPTION
unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1).
OPTIONS -c Use conditional allele frequencies.
-l Choose a good set of loop breakers automatically.
RETURN VALUE
0 Successful completion
ERRORS
10 File not found
255 Failure
EXAMPLES
Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this:
unknown
mlink
FILES unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to
the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat.
NOTES unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite of computer tools that help investigate
genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott.
AUTHORS
Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al.
This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others).
WORD-WIDE-WEB
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
SEE ALSO ilink(1), linkmap(1), lodscore(1), mlink(1).
April 15, 2003 UNKNOWN(1)