I had to write a script to change my login password, and the script wasnt working fine. When I searched through the previous postings in this forum, I got the solution (using 'expect' tool).
But I would like to know why passwd command isnt working in scripts? (1 Reply)
im trying to get an ARP readout using the command 'arp -a'... but the command doesnt exist in Fedora Core 6 - IPv6.... is there an equivalent command? (4 Replies)
I am using Ubuntu linux desktop, and I am trying to schedule a sheel script to run every 10minutes.
These are the steps I have taken:
crontab -e
added and saved this line to the file
# m h dom mon dow command
*/1 * * * * /home/enzo/Desktop/dlrecentuse
restarted cron:
sudo... (5 Replies)
I need help running a script. I have the script looking into a folder and converting .doc files to .odt. The script works fine except that I want it to only run when .doc files are present. If I can do this then I can put .xls files and .ppt files in the folder and convert them when they are... (2 Replies)
Hi,
Another problem, here is my code
#!/bin/sh
dir='/opt/apps/script/CSV'
datadir='/opt/apps/script/data'
while : ; do
ls -1rt $dir/*.csv > /dev/null 2>&1
if ;then
cp $datadir/weekly.txt $dir/weekly.csv
else
exit 0
fi
done (10 Replies)
Hi I have a job that has been running for a while with the following statement to cleanup a directory:
find /dbmgtu01/app/myplace/log ! \( -name "dc*" -o -name "sc*" -o -name "ms*" \) -type f -mtime +30 -print -exec rm {} \ ;
The directory was recently changed to a mount point, with a symbolic... (2 Replies)
Hi there, normally if I want to remove a user tht I have added to a specific group, i would do the following
this is what my group2 looks like
# grep group2 /etc/group
group2:x:7777:user2,user1,user4
user1 has been defined in a few groups
# id -nG user1
group1 group2 group3
So... (3 Replies)
Hello Everyone,
I'm currently have a requirement where I've generated a list of files with specific attributes and I need to know what lines are similar between the two files. For example:
-File 1-
line1
line2
line3
-File 2-
line1
line2
line4
line5
-Desires Output-
line1
line2... (5 Replies)
Hi,
I am unable to achieve the file exist conditions if there are multiple files same similar name for e.g. in a $Direct i am having files like
aus.txt
aus.txt_pr
aus.txt_2012
i need to put a file exist condition like which is not working
then
echo "File present"
but the... (9 Replies)
I have a file "file1" that contains several ip address , and the "file2" contains several records , each line in file2 contains somewhere the ip address that i am searching in the file1
I use the unix command grep -w
for i in `cat file1`
do
grep -w "$i" file2 >> file3
done
... (9 Replies)
Discussion started by: knijjar
9 Replies
LEARN ABOUT DEBIAN
bio::updateableseqi
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)