Hi,
So my file looks like this:
title number
JR 2
JR 2
JR 4
JR 5
NM 5
NM 8
NM 2
NM 8
I used this line that I wrote to convert it to rows so it will look like this:
awk -F"\t" '!/^$/{a=a" "$3} END {for ( i in a) {print i,a}}' occ_output.tab > test.txt
JR 2 2 4 5
NM 5 8... (4 Replies)
Hi
I am trying to retrieve values from a tab-delimited file.I am using
while read record
value=`echo $record | cut -f12`
done
Where 12 is the column no i want retieve and record is one line of the file.
But it is returning the full record.
Plz help (4 Replies)
I'm facing a strange problem, please help me out.
Here we go.
I want to count number of fields in particular file.
filename and delimiter character will be passed through parameter.
On command prompt if i type following i get 27 as output (which is correct)
cat customer.dat | head -1 | awk... (12 Replies)
Hi,
I have the following code:
LIST=`ls | grep '.sql$'`
echo $LIST
The above code will give me something like..
file1.sh file2.sh file3.sh file4.sh file5.sh
I want to display the values into rows using echo like...
file1.sh
file2.sh (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
Hi,
I need urgent help with a tab delimited file I am working on.
This is the file :
TTTT|YYYYYYY|jargon-journal|MP0000000UID||"j1, j2, j3"
I need th following output:
TTTT|YYYYYYY|jargon-journal|MP0000000UID||ji
TTTT|YYYYYYY|jargon-journal|MP0000000UID||j2... (8 Replies)
Hello!
I have a tab delimited file with values in three columns. Some values occur in all three columns, other values are present in only one or two columns. I would like to sort the file so that rows with no missing values come first, rows with one missing values come next, and rows with two... (9 Replies)
I have a file like this.
It is tab delimited.
Unfortunately, the missing data was filled in with a period "." (see the leading lines 1-5 columns)
I want to substitute the periods for misisng data with an integer "-999".
however, I do not want the global replace to change the other periods seen... (7 Replies)
Hello,
I have 40 data files where the first three columns are the same (in theory) and the 4th column is different. Here is an example of three files,
file 2: A_f0_r179_pred.txt
Id Group Name E0
1 V N(,)'1 0.2904
2 V N(,)'2 0.3180
3 V N(,)'3 0.3277
4 V N(,)'4 0.3675
5 V N(,)'5 0.3456
... (8 Replies)
Discussion started by: LMHmedchem
8 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)