OK sir ctsgnb ! The input is (just the beginning because the original file contain more than 100,000 lines ! ):
and the output file must be like that :
This is one group even if the IDs in bold charachter don't share more than 80% of identity
a very simple case is when you have A--B--C association but the A and C don't share enough identity to be considered together but is one continue group . I don't now if i'm clear ctsgnb
Thanks again for your help
Last edited by vgersh99; 01-03-2012 at 01:41 PM..
Reason: fixed code tags
Hey guys,
I have this file generated by me... i want to create some HTML output from it.
The problem is that i am really confused about how do I go about reading the file.
The file is in the following format:
TID1 Name1 ATime=xx AResult=yyy AExpected=yyy BTime=xx BResult=yyy... (8 Replies)
Hi All
I would like to merge multiple files with the same row and column size into a matrix format
In a folder I have multiple files in the following format
vi 12.txt
a 1
b 5
c 7
d 0
vi 45.txt
a 3
b 6
c 9
d 2
vi 9.txt
a 4 (7 Replies)
Hi all,
Is there a way to convert full data matrix to linearised left data matrix?
e.g full data matrix
Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0 0.241058 0.236129 0.244397 0.237479 0.240767 0.245245
Bh2 0.241058 0 0.240594 0.241931 0.241975 ... (8 Replies)
Hi everyone
I am very new at awk but think that that might be the best strategy for this. I have a matrix very similar to a correlation matrix and in practical terms I need to convert it into a list containing the values from the matrix (one value per line) with the first field of the line (row... (5 Replies)
Hi,
I do have couple of files in a folder. The names of each of the files have a pattern.
ahet_005678.txt
ahet_005898.txt
ahet_007678.txt
ahet_004778.txt
...
...
ahet_002378.txt
Each of the above files have the same pattern of data with 4 columns and have an header for the last 3... (4 Replies)
Hi All
I do have a matrix in the following format
a_2 a_3 s_4 t_6
b 0 0.9 0.004 0
c 0 0 1 0
d 0 0.98 0 0
e 0.0023 0.96 0 0.0034
I have thousands of rows
I would like to parse the maximum value in each of the row and out put that highest value along the column header of... (2 Replies)
I do have a large matrix of the following format and it is tab delimited
ch-ab1-20 ch-bb2-23 ch-ab1-34 ch-ab1-24 er-cc1-45 bv-cc1-78
ch-ab1-20 0 2 3 4 5 6
ch-bb2-23 3 0 5 ... (6 Replies)
Discussion started by: Kanja
6 Replies
LEARN ABOUT OPENDARWIN
id
ID(1) BSD General Commands Manual ID(1)NAME
id -- return user identity
SYNOPSIS
id [user]
id -G [-n] [user]
id -P [user]
id -g [-nr] [user]
id -p [user]
id -u [-nr] [user]
DESCRIPTION
The id utility displays the user and group names and numeric IDs, of the calling process, to the standard output. If the real and effective
IDs are different, both are displayed, otherwise only the real ID is displayed.
If a user (login name or user ID) is specified, the user and group IDs of that user are displayed. In this case, the real and effective IDs
are assumed to be the same.
The options are as follows:
-G Display the different group IDs (effective, real and supplementary) as white-space separated numbers, in no particular order.
-P Display the id as a password file entry.
-g Display the effective group ID as a number.
-n Display the name of the user or group ID for the -G, -g and -u options instead of the number. If any of the ID numbers cannot be
mapped into names, the number will be displayed as usual.
-p Make the output human-readable. If the user name returned by getlogin(2) is different from the login name referenced by the user ID,
the name returned by getlogin(2) is displayed, preceded by the keyword ``login''. The user ID as a name is displayed, preceded by
the keyword ``uid''. If the effective user ID is different from the real user ID, the real user ID is displayed as a name, preceded
by the keyword ``euid''. If the effective group ID is different from the real group ID, the real group ID is displayed as a name,
preceded by the keyword ``rgid''. The list of groups to which the user belongs is then displayed as names, preceded by the keyword
``groups''. Each display is on a separate line.
-r Display the real ID for the -g and -u options instead of the effective ID.
-u Display the effective user ID as a number.
DIAGNOSTICS
The id utility exits 0 on success, and >0 if an error occurs.
SEE ALSO who(1)STANDARDS
The id function is expected to conform to IEEE Std 1003.2 (``POSIX.2'').
HISTORY
The historic groups(1) command is equivalent to ``id -Gn [user]''.
The historic whoami(1) command is equivalent to ``id -un''.
The id command appeared in 4.4BSD.
BSD June 6, 1993 BSD