OK sir ctsgnb ! The input is (just the beginning because the original file contain more than 100,000 lines ! ):
and the output file must be like that :
This is one group even if the IDs in bold charachter don't share more than 80% of identity
a very simple case is when you have A--B--C association but the A and C don't share enough identity to be considered together but is one continue group . I don't now if i'm clear ctsgnb
Thanks again for your help
Last edited by vgersh99; 01-03-2012 at 01:41 PM..
Reason: fixed code tags
Hey guys,
I have this file generated by me... i want to create some HTML output from it.
The problem is that i am really confused about how do I go about reading the file.
The file is in the following format:
TID1 Name1 ATime=xx AResult=yyy AExpected=yyy BTime=xx BResult=yyy... (8 Replies)
Hi All
I would like to merge multiple files with the same row and column size into a matrix format
In a folder I have multiple files in the following format
vi 12.txt
a 1
b 5
c 7
d 0
vi 45.txt
a 3
b 6
c 9
d 2
vi 9.txt
a 4 (7 Replies)
Hi all,
Is there a way to convert full data matrix to linearised left data matrix?
e.g full data matrix
Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0 0.241058 0.236129 0.244397 0.237479 0.240767 0.245245
Bh2 0.241058 0 0.240594 0.241931 0.241975 ... (8 Replies)
Hi everyone
I am very new at awk but think that that might be the best strategy for this. I have a matrix very similar to a correlation matrix and in practical terms I need to convert it into a list containing the values from the matrix (one value per line) with the first field of the line (row... (5 Replies)
Hi,
I do have couple of files in a folder. The names of each of the files have a pattern.
ahet_005678.txt
ahet_005898.txt
ahet_007678.txt
ahet_004778.txt
...
...
ahet_002378.txt
Each of the above files have the same pattern of data with 4 columns and have an header for the last 3... (4 Replies)
Hi All
I do have a matrix in the following format
a_2 a_3 s_4 t_6
b 0 0.9 0.004 0
c 0 0 1 0
d 0 0.98 0 0
e 0.0023 0.96 0 0.0034
I have thousands of rows
I would like to parse the maximum value in each of the row and out put that highest value along the column header of... (2 Replies)
I do have a large matrix of the following format and it is tab delimited
ch-ab1-20 ch-bb2-23 ch-ab1-34 ch-ab1-24 er-cc1-45 bv-cc1-78
ch-ab1-20 0 2 3 4 5 6
ch-bb2-23 3 0 5 ... (6 Replies)
Discussion started by: Kanja
6 Replies
LEARN ABOUT DEBIAN
pango::matrix
Pango::Matrix(3pm) User Contributed Perl Documentation Pango::Matrix(3pm)NAME
Pango::Matrix - A structure specifying a transformation between user-space coordinates and device coordinates
HIERARCHY
Glib::Boxed
+----Pango::Matrix
METHODS
matrix = Pango::Matrix->new ($xx=1., $xy=0., $yx=0., $yy=1., $x0=0., $y0=0.)
o $xx (double)
o $xy (double)
o $yx (double)
o $yy (double)
o $x0 (double)
o $y0 (double)
$matrix->concat ($new_matrix)
o $new_matrix (Pango::Matrix)
$matrix->rotate ($degrees)
o $degrees (double)
$matrix->scale ($scale_x, $scale_y)
o $scale_x (double)
o $scale_y (double)
(dx, dy) = $matrix->transform_distance ($dx, $dy)
o $dx (double)
o $dy (double)
Since: pango 1.16
array reference = $matrix->transform_pixel_rectangle ($rect)
o $rect (array reference)
Since: pango 1.16
(x, y) = $matrix->transform_point ($x, $y)
o $x (double)
o $y (double)
Since: pango 1.16
array reference = $matrix->transform_rectangle ($rect)
o $rect (array reference)
Since: pango 1.16
$matrix->translate ($tx, $ty)
o $tx (double)
o $ty (double)
double = $matrix->x0 ($new)
o $new (double)
double = $matrix->xx ($new=0)
o $new (double)
double = $matrix->xy ($new)
o $new (double)
double = $matrix->y0 ($new)
o $new (double)
double = $matrix->yx ($new)
o $new (double)
double = $matrix->yy ($new)
o $new (double)
SEE ALSO
Pango, Glib::Boxed
COPYRIGHT
Copyright (C) 2003-2011 by the gtk2-perl team.
This software is licensed under the LGPL. See Pango for a full notice.
perl v5.14.2 2011-11-15 Pango::Matrix(3pm)