In the above file, some lines have empty field3. The requirement is to fill the missing field3 with the previous field3 value.
i.e. In line 3,4&5, field3 should have the value BusIntBatchMgr. In line 8, field3 should have the value Batch.
Please let me know how to achieve this in PERL, SED or AWK (any combination). Please give me the code. Thanks in advance.
Last edited by Franklin52; 01-02-2012 at 04:03 PM..
Reason: Please use code tags for data and code samples, thank you
Hi,
I would like to insert a file's filename into the first line of that file - for a batch of files. Is this possible using SED? Thanks in advance. (2 Replies)
Dear All,
I have the following input file. I want to replace data with null values.
I/P File:
9022334455|2008-12-06 06:10:21|2|Error@@@|esoo8erp|
9024334432|2008-12-06 08:40:59|6|Error@@@|6y2o8e6r|
O/P File:
9022334455||2||esoo8erp|
9024334432||6||6y2o8e6r|
... (4 Replies)
Hi
I have a file in the foll. format
*RECORD*
*FIELD NO*
.......
.......
*FIELD TX*
Data
*FIELD AV*
Data
*FIELD RF*
*RECORD*
*FIELD NO*
.......
.......
*FIELD TX*
Data
*FIELD RF* (4 Replies)
I'm attempting to insert multiple lines before a line matching a given search pattern. These lines are generated in a separate function and can either be piped in as stdout or read from a temporary file.
I've been able to insert the lines from a file after the pattern using:
sed -i '/pattern/... (2 Replies)
Greetings all,
I am trying to match a string, and after that insert a few lines above that match.
The string is "Version 1.0.0". I need to insert a few lines ONLY above the first match (there are many Version numbers in the file). The rest of the matches must be ignored. The lines I need to... (2 Replies)
Hi all,
I have two (2) sets of files that are based on some snapshots of database that I want to merge and insert any missing sequential number.
Below are example representation of these files:
file1:
DATE TIME COL1 COL2 COL3 COL4 ID
01/10/2013 0800 100 ... (3 Replies)
Hi All,
I am trying to insert two columns in the following text. I tried awk but failed to achieve. Highly appreciate your help
DATETIME="28-Sep-2013;20:09:08;"
CONTROL="AB"
echo "Myfile.txt;11671;7824.90;2822.48"
The DATETIME will be inserted at the beginning and CONTROL will... (4 Replies)
Hi Friends,
Below is my input file with "|" (pipe) as filed delimiter:
My Input File:
HDR|F1|F2||||F6|F7
I want to inser values in the record for field 4 and field 5.
Expected output
HDR|F1|F2||F4|F5|F6|F7
I am able to append the string to the end of the record, but not in between the... (3 Replies)
Using the file below, which will always have the first indicated by the digit after the -
and last id in it, indicated by the digit after the -, I am trying to use awk
to print the missing line or lines in file following the pattern of the previous line.
For example, in the file below the next... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
asnval
ASNVAL(1) NCBI Tools User's Manual ASNVAL(1)NAME
asnval - validate ASN.1 biological sequence records
SYNOPSIS
asnval [-] [-A] [-B] [-C N] [-D] [-E str] [-F] [-G] [-J] [-K] [-L filename] [-M] [-N flags] [-P N] [-Q N] [-R N] [-S N] [-T] [-U] [-X] [-Y]
[-Z] [-a type] [-b] [-c] [-d path] [-e] [-f str] [-i filename] [-k] [-l] [-o filename] [-p path] [-q] [-r] [-u] [-v N] [-x str]
DESCRIPTION
asnval is a command-line tool to validate ASN.1-format biological sequence records.
OPTIONS
A summary of options is included below.
- Print usage message
-A Validate Alignments
-B Validate Barcodes
-C N Max count
-D Disable message suppression
-E str Only Error Code to Show
-F Test network access
-G GI lookup from accession
-J Require ISO-JTA?
-K Summary to error file
-L filename
Log File
-M Match locus_tag against General ID
-N flags
Latitude-longitude / country flags
0 none
1 test state/province
2 ignore water exception
3 both of the above
-P N Highest severity for error to show:
0 none
1 informational
2 warning
3 error (default for -Q)
4 grounds for rejection (default for -P, -R)
-Q N Lowest severity for error to show, per P
-R N Severity for error in return code, per P
-S N Skip count
-T Use Threads
-U Genome center submission
-X Exon splice check
-Y Check against old IDs
-Z Remote CDS product fetch
-a type
Input ASN.1 type:
a Automatic (default)
c Catenated
z Any
e seq-Entry
b Bioseq
s bioseq-Set
m seq-subMit
t baTch bioseq-set
u batch seq-sUbmit
-b Batch file is Binary
-c Batch file is Compressed
-d path
Path to Indexed Binary ASN.1 Data
-e Ignore transcription/translation Exceptions
-x str Substring filter
-i filename
Single input file (standard input by default)
-k Local fetching
-l Lock components in advance
-o filename
Single output file
-p path
Path to ASN.1 Files
-q Taxonomy lookup
-r Remote Fetching from ID
-u Recurse
-v N Verbosity:
1 Standard report (default)
2 Accession / severity / code (space delimited)
3 Accession / severity / code (tab delimited)
4 XML report
5 Accession / GI / severity / code (tab delimited)
-x str File selection substring (.ent by default)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asndisc(1), cleanasn(1), sequin(1).
NCBI 2012-06-24 ASNVAL(1)