Sponsored Content
Top Forums Shell Programming and Scripting matching strings from different files Post 302584555 by verse123 on Friday 23rd of December 2011 04:10:24 PM
Old 12-23-2011
matching strings from different files

I want to compare file 1 to file 2 and if a string from file 1 appears in file 2, then print the file 2 row, where the string appears, onto file3.

file 1 looks like this.
Code:
DOG_0004340 blah blah2 j 22424
DOG_3010311 blah blah3 o 24500
DOG_9949221 blah blah6 x 35035

file 2 looks like this:
Code:
2R PROGRAM exo 3455 7943 . + . id "blah_01"; train "DOG_0004340"; "blah";
2R PROGRAM exo 7855 9935 . + . id "blah_02"; train "DOG_0004340"; "blah";
2R PROGRAM exo 7855 9943 . + . id "blah_01"; train "DOG_0004340"; "blah";
2R PROGRAM exo  2565 3673 . + . id "blah_01"; train "DOG_3010311"; "blah";
2R PROGRAM exo  4665 4873 . + . id "blah_01"; train "DOG_3010311"; "blah";

So basically, If the word "DOG_" (plus any numerical variation) from column 1 in file 1 appears in file 2, print the file 2 row that has the corresponding string plus all of its repeats onto file 3.

Does anyone have any ideas?

Moderator's Comments:
Mod Comment Use code tags, see PM, thanks.

Last edited by zaxxon; 12-23-2011 at 05:15 PM.. Reason: code tags
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

matching characters between strings

please send the logic or program to find the matching characters between two strings for ex string1 :abc string2 :adc no .of matching characters is 2(a,c) (9 Replies)
Discussion started by: akmtcs
9 Replies

2. Shell Programming and Scripting

Strings not matching

Hi, I have got two variables holding strings, if i echo them, they print the same value but if i compare the condition fails?? can somebody suggest something?? I have checked the word count too, they are also same. Thanks, Atul (4 Replies)
Discussion started by: atulmt
4 Replies

3. Programming

help with matching strings

In C programming how do i check if a char is equal to a vowel , like a e i o or u, small or big case. in my function i have the parameter like *word, and i am using word in a for loop, to check if its equal. i use tolower(word)=='a' || ..... but for some reason it only matches on lower case and... (1 Reply)
Discussion started by: omega666
1 Replies

4. UNIX for Dummies Questions & Answers

Help with finding matching position on strings

I have a DNA file like below and I am able to write a short program which finds/not an input motif, but I dont understand how I can include in the code to report which position the motif was found. Example I want to find the first or all "GAT" motifs and want the program to report which position... (12 Replies)
Discussion started by: pawannoel
12 Replies

5. Shell Programming and Scripting

Picking matching strings

I have a list of file names. However in some instances I might have a "-" at the beginning of the filename or an "=". For example I might have something like this set Lst = "file1 file2 file3 -file4 file5=" I want to pick up the ones having "-" at the beginning or "=" and store them in... (22 Replies)
Discussion started by: kristinu
22 Replies

6. Shell Programming and Scripting

Concatenating 2 lines from 2 files having matching strings

Hello All Unix Users, I am still new to Unix, however I am eager to learn it.. I have 2 files, some lines have some matching substrings, I would like to concatenate these lines into one lines, leaving other untouched. Here below is an example for that.. File 1 (fasta file): >292183... (6 Replies)
Discussion started by: Mohamed EL Hadi
6 Replies

7. Shell Programming and Scripting

Need to append matching strings in a file

Hi , I am writing a shell script to check pvsizes in linux box. # for i in `cat vgs1` > do > echo "########### $i ###########" > pvs|grep -i $i|awk '{print $2,$1,$5}'>pvs_$i > pvs|grep -i $i|awk '{print $1}'|while read a > do > fdisk -l $a|head -2|tail -1|awk '{print $2,$3}'>pvs_$i1 >... (3 Replies)
Discussion started by: nanduri
3 Replies

8. Shell Programming and Scripting

Matching only the strings I provide - sed

Hello.. I am currently learning sed and have found myself in some trouble.. I wrote this command: sed -ne 's/*\(\{2\}*\{2\}*\{2\}*\).*\(\{2\}*\{2\}*\{2\}*\).*/\1\2/p' and some of the output i get is : ->stockholm->paris<-stockholmpi<-tokyo->paris<-stockholmpi... (8 Replies)
Discussion started by: jozo95
8 Replies

9. UNIX for Beginners Questions & Answers

(g)awk: Matching strings from one file in another file between two strings

Hello all, I can get close to what I am looking for but cannot seem to hit it exactly and was wondering if I could get your help. I have the following sample from textfile with many thousands of lines: File 1 PS001,001 HLK PS002,004 L<G PS004,002 XNN PS004,006 BVX PS004,006 ZBX=... (7 Replies)
Discussion started by: jvoot
7 Replies

10. UNIX for Beginners Questions & Answers

How to extract the partial matching strings among two files?

I have a two file as shown below, file:1 >Contig_152_415 (REVERSE SENSE) >Contig_152_420 (REVERSE SENSE) >Contig_152_472 (REVERSE SENSE) >Contig_152_484 (REVERSE SENSE) File:2 >Contig_152:49081-49929 ATCGAGCAGCGCCGCGTGCGGTGCACCCTTGTGCAGATCGGGAGTAACCACGCGCACGGC... (2 Replies)
Discussion started by: dineshkumarsrk
2 Replies
Imager::QRCode(3pm)					User Contributed Perl Documentation				       Imager::QRCode(3pm)

NAME
Imager::QRCode - Generate QR Code with Imager using libqrencode SYNOPSIS
use Imager::QRCode; my $qrcode = Imager::QRCode->new( size => 2, margin => 2, version => 1, level => 'M', casesensitive => 1, lightcolor => Imager::Color->new(255, 255, 255), darkcolor => Imager::Color->new(0, 0, 0), ); my $img = $qrcode->plot("blah blah"); $img->write(file => "qrcode.gif"); # or instance method use Imager::QRCode qw(plot_qrcode); my $img = plot_qrcode("blah blah", \%params); $img->write(file => "qrcode.gif"); DESCRIPTION
This module allows you to generate QR Code with Imager. This module use libqrencode '2.0.0' and above. METHODS
new $qrcode = Imager::QRCode->new(%params); The "new()" constructor method instantiates a new Imager::QRCode object. "new()" accepts the following parameters. o "size" - Horizontal and vertical size of module(dot). Default is 4. o "margin" - Margin size of QR Code. Default is 3. o "level" - Error collectin level. Valid values are 'M', 'L', 'Q' or 'H'. Default is 'L'. o "version" - Version of the symbol. If specify '0', this module chooses the minimum version for the input data. Default is '0'. o "mode" - Encoding mode. Valid values are 'numerical', 'alpha-numerical', '8-bit' or 'kanji'. Default is '8-bit'. If not give "casesensitive" then should be given "mode". If 'kanji' is given, characters will be encoded as Shift-JIS characters. If '8-bit' is given, all of non-alpha-numerical characters will be encoded as is. If you want to embed UTF-8 string, choose '8-bit'. o "casesensitive" - If your application is case-sensitive using 8-bit characters, set to '1'. Default is '0'. plot($text) $img = $qrcode->plot("blah blah"); Create a new QR Code image. This method returns Imager object ploted QR Code with the given text. INSTANT METHODS
plot_qrcode($text, \%params) Instant method. $text is input text. %params is same parameter as "new()". SEE ALSO
"Imager", "http://www.qrcode.com/", "http://megaui.net/fukuchi/works/qrencode/index.en.html" AUTHOR
Yoshiki KURIHARA "<kurihara __at__ cpan.org>" THANKS
Tokuhiro Matsuno LICENCE AND COPYRIGHT
Copyright (c) 2011, Yoshiki KURIHARA "<kurihara __at__ cpan.org>". This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See perlartistic. perl v5.14.2 2012-12-16 Imager::QRCode(3pm)
All times are GMT -4. The time now is 07:02 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy