Differential substring removal using coordinates Post: 302584290

9 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Tar differential backup

I am backing up some data to an NTFS formatted backup drive. I have to preserve the Unix permissions of the data being backed up and therfore use backup into a tar file. I would like to backup the differnential data in the tar file similiar to how Rsync works so as to save on backup time as it...

2. High Performance Computing

Differential Equations

I`m having a cluster with Rocks 5.2 distribution and I want to solve differential equations and I`m interested to know if are some programs already developed to do this.

3. UNIX for Advanced & Expert Users

Differential or Incremental backups in Unix

Hi, Just wanted to know is there any way that we can take differential or incremental backups in Unix(Solaris/AIX/Linux or Hpunix).What is the procedure. Is any doc avaialble on this? Its urgent and any help/suggestions would be highly appreciable. Regards, Ravi Dwivedi

4. Shell Programming and Scripting

Search for particular tag and arrange as coordinates

Hi I have a file whose sample contents are shown here, 1.2.3.4->2.4.2.4 a(10) b(20) c(30) 1.2.3.4->2.9.2.4 a(10) c(20) 2.3.4.3->3.6.3.2 b(40) d(50) c(20) 2.3.4.3->3.9.0.2 a(40) e(50) c(20) 1.2.3.4->3.4.2.4 a(10) c(30) 6.2.3.4->2.4.2.5 c(10) . . . . Here I need to search...

5. Shell Programming and Scripting

Determination n points between two coordinates

Hi guys. Can anyone tell me how to determine points between two coardinates. For example: Which type of command line gives me 50 points between (8, -5, 7) and (2, 6, 9) points Thanks

6. UNIX for Dummies Questions & Answers

removal by substring

Hi guys, I am trying to remove lines that have a duplicate substring from any part in the file. So, for ex: 433043950359.3 5033 305935 2 2dd 5ffgs DOG43453552.A 3443565634 95460 3435 45 23d 56ggh DOG343211 3423895702359 34 66699 9455 2324 DOG43453552.B This is a very large file, and...

7. UNIX for Dummies Questions & Answers

[SOLVED] Restoring differential backup files

I'm using a script (automysqlbackup) to dump mysql db's to .sql file followed by taking one full backup of the .sql file and the differential backups of the newer sql file every day using the tool diff. Now the backup destination folder contains files like, I would like to how do i restore...

8. UNIX for Dummies Questions & Answers

overlapped genomic coordinates

Hi, I would like to know how can I get the ID of a feature if its genomic coordinates overlap the coordinates of another file. Example: Get the 4th column (ID) of this file1: chr1 10 100 gene1 chr2 3000 5000 gene2 chr3 200 1500 gene3 if it overlaps with a feature in this file2: chr2...

9. UNIX for Beginners Questions & Answers

Help with processing coordinates in a file.

I have a variation table (variation.txt) which is a very big file. The first column in the chromosome number and the second column is the position of the variation. I have a second file annotation.txt which has a list of 37,000 genes (1st column), their chromosome number(2nd column), their start...

LEARN ABOUT DEBIAN

bomstrip

BOMSTRIP(1)						    BSD General Commands Manual 					       BOMSTRIP(1)

NAME

     bomstrip, bomstrip-files -- strip the BOM sequence from UTF-8 files

SYNOPSIS

     bomstrip
     bomstrip-files file ...

DESCRIPTION

     The bomstrip utility reads UTF-8 data from its standard input and copies it to its standard output, stripping the BOM (byte-order mark) from
     the beginning of the text if it is present.  There are no command-line options and no parameters.

     The bomstrip-files utility removes the UTF-8 BOM from the specified files, saving each file's original contents with a .bom extension.  It
     uses the bomstrip utility, trying to execute it as ``bomstrip''; if the bomstrip utility is installed under another name, or if a more com-
     plex command is desired, it may be supplied in the BOMSTRIP environment variable.

EXAMPLES

     Strip the BOM, if present, from a text file:

	   bomstrip < bom.txt > nobom.txt

     Strip the BOM, if present, from all text files, backing them up with a .bom extension:

	   bomstrip-files *.txt

     Use the OCAML implementation of bomstrip:

	   env BOMSTRIP='ocaml bomstrip.ocaml' bomstrip-files *.txt

SEE ALSO

     The bomstrip home page: http://www.xs4all.nl/~mechiel/projects/bomstrip/

HISTORY

     The bomstrip utility (in many languages) was written by Mechiel Lukkien, with implementations in various languages sent to him by others,
     including Andreas Gohr, Andrew Gerrand, Berteun Damman, Matthijs Bomhoff, Peter Pentchev, and Ruben Smelik.  The bomstrip-files utility and
     this manual page were written by Peter Pentchev in the hope that they reflect the behavior of all the bomstrip implementations in all lan-
     guages.

AUTHORS

     Mechiel Lukkien <mechiel@xs4all.nl>
     Peter Pentchev <roam@ringlet.net>

BSD
								   June 14, 2008							       BSD