I've been searching and reading, but I can't figure out how to solve this problem with my newbie skills.
In my directory, I have a list of files (see dirlist.txt attachment) that I need to merge and rename. I have part of the code of the code figured out (see below). However, I have no idea how to replace the barcode sequence (6 letter combination in the center) with the barcode number based on barcodekey.txt. awk seems like the command I need, but I can't figure out how.
Could you please help and explain how it works (that way I don't have to come back again for a minor change; eg, when we decide to change CRC1_bc05 to AA_01_T in 6 mo)?
As a bonus, is there a way to change CRC (in the lanename) to ColonTrio while leaving the 1 and not messing up the merge [ ! -f ...] part? Would you recommend doing it before the merge and change what the [!-f is looking for] Or should I just do sed at the very end after done?
Hi friends :)
I am having a small problem and ur help is needed...
I have a long file from which i want to select only some portions after filtering (grep).
My file looks like :
header
xxyy
lmno
xxyy
wxyz
footer
header
abcd
xy
pqrs
footer
.
. (14 Replies)
I'm looking to determine if I can use a grep command to read file and rename the file based on the first 3 characters of the data in the file.
An example is:
Read FileA
If the first 3 positions of the data in the file are "ITP", then rename the file as FileA_ITP, else if the first 3... (3 Replies)
Well the title is not too good, so I will explain.
I need to move (rename) files using a simple AIX script.
???file1.txt
???file2.txt
???file1a.txt
???file2a.txt
to be:
???renamedfile1'date'.txt
???renamedfile2'date'.txt
???renamedfile1a'date'.txt
???renamedfile2a'date'.txt
... (4 Replies)
All,
Below is the file, what i need to do is take the text in between the /*-- and --*/ , i mean the jobs. Then i have grep for system name . If the job is there in system 1 i have to print to a file.
Basically i want to take all the jobs that are in system1 to another file . because... (7 Replies)
Hi everyone.
I'm in need of a solution where i need to rename a folder to a name that's inside an XML file in that folder.
OS is Ubuntu 9.10 with Gnome.
I've tried using grep, sed and xpath, but can't seem to find a solution.
This is the simplified folder structure:
FOLDER-NAME
-... (4 Replies)
Good day.
I need a one-liner (if possible) otherwise a longer script to do the following:
I have a list of files in a directory with the same filename extension, ie.
firstfile.cks, anotherfile.cks, somefile.cks, etc.The filename and extension, however, are incorrect. The correct filename... (7 Replies)
I am trying to use the two files shown below to either remove or rename contents in one of those files. If in file1.txt $5 matches $5 of file2.txt and the value in $1 of file1.txt is not "No Match" then that value is substituted for all values in $5 and $1 of file2.txt. If however in $1 ... (5 Replies)
Hello, I have a text file "file.list" with the contents below.
file1
filename1
file2
filename2
file3
filename3
file1, file2 and file3 are files existing in the same directory as the text file file.list.
I want to rename file1 to filename1, file2 to filename2, as show in the text... (1 Reply)
In the below bash I am trying to copy the only text file (always only one) in /home/cmccabe/Desktop/list/QC/metrics.txt and rename each of the 3 text files according to /home/cmccabe/Desktop/test/list.txt using lines 3, 4 ,5. This format (that is list.txt) is always 5 lines. Thank you :).
... (12 Replies)
In the portion of bash below I am using rename to match the $id variable to $file and when a match (there will alwsys be one) is found then the $id is removed from each bam and bam.bai in $file and _test is added to thee file name before the extension. Each of the variables is set correctly but... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
git-merge-index
GIT-MERGE-INDEX(1) Git Manual GIT-MERGE-INDEX(1)NAME
git-merge-index - Run a merge for files needing merging
SYNOPSIS
git merge-index [-o] [-q] <merge-program> (-a | [--] <file>*)
DESCRIPTION
This looks up the <file>(s) in the index and, if there are any merge entries, passes the SHA1 hash for those files as arguments 1, 2, 3
(empty argument if no file), and <file> as argument 4. File modes for the three files are passed as arguments 5, 6 and 7.
OPTIONS --
Do not interpret any more arguments as options.
-a
Run merge against all files in the index that need merging.
-o
Instead of stopping at the first failed merge, do all of them in one shot - continue with merging even when previous merges returned
errors, and only return the error code after all the merges.
-q
Do not complain about a failed merge program (a merge program failure usually indicates conflicts during the merge). This is for
porcelains which might want to emit custom messages.
If git merge-index is called with multiple <file>s (or -a) then it processes them in turn only stopping if merge returns a non-zero exit
code.
Typically this is run with a script calling git's imitation of the merge command from the RCS package.
A sample script called git merge-one-file is included in the distribution.
ALERT ALERT ALERT! The git "merge object order" is different from the RCS merge program merge object order. In the above ordering, the
original is first. But the argument order to the 3-way merge program merge is to have the original in the middle. Don't ask me why.
Examples:
torvalds@ppc970:~/merge-test> git merge-index cat MM
This is MM from the original tree. # original
This is modified MM in the branch A. # merge1
This is modified MM in the branch B. # merge2
This is modified MM in the branch B. # current contents
or
torvalds@ppc970:~/merge-test> git merge-index cat AA MM
cat: : No such file or directory
This is added AA in the branch A.
This is added AA in the branch B.
This is added AA in the branch B.
fatal: merge program failed
where the latter example shows how git merge-index will stop trying to merge once anything has returned an error (i.e., cat returned an
error for the AA file, because it didn't exist in the original, and thus git merge-index didn't even try to merge the MM thing).
GIT
Part of the git(1) suite
Git 1.7.10.4 11/24/2012 GIT-MERGE-INDEX(1)