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Top Forums Web Development met problem with do() in MySQL Post 302582278 by yifangt on Thursday 15th of December 2011 10:01:42 AM
Old 12-15-2011
met problem with do() in MySQL

Hi, I had a chance to create a database refreshing the previous post. An error was tossed out with the following message:
Code:
DBI  connect('nr20111117_db','yifangt',...) failed: Unknown database  'nr20111117_db' at create-nrDB-20111214.pl line 17
Cannot connect: Unknown database 'nr20111117_db' at  create-nrDB-20111214.pl line 17.

Obviously the problem is line 17 to CREATE DATABASE and TABLE. Appreciate any help. Thanks a lot!
Code:
#!/usr/bin/perl -w
use strict;
use DBI;

my $DataBaseName="nr20111117_db";
my $DataBaseHost="localhost";
my $MySQLUser="yifangt";
my $MySQLUserPass="PassWord";
my $dsn="DBI:mysql";
my $Table="table01";

my $dbh = DBI->connect("$dsn:$DataBaseName", $MySQLUser, $MySQLUserPass) or die "Cannot connect: " . $DBI::errstr;

   $dbh->do("CREATE DATABASE $DataBaseName");
   $dbh->do("CREATE TABLE $Table (
            number    INT NOT NULL AUTO_INCREMENT  PRIMARY KEY,
              gi_id     VARCHAR(20),
            description     TEXT)"
        );

my $sql = qq{INSERT INTO $Table (number, gi_id, description) VALUES (?, ?, ?)};
my $sth = $dbh->prepare($sql);
my $file_name="/home/yifang/20111114-Yangdou/BLAST-vs-nr/nr-headers+row.tab";

open (FILE, "<", $file_name) or die "Cannot open the file named $file_name to read: $!";

#################### Example rows of the data
#Run_Number gi_ID    Description
# 1 >gi|15674171|ref|NP_268346.1|   30S ribosomal protein S18 
# 2 >gi|66816243|ref|XP_642131.1|    hypothetical protein DDB_G0277827 [Dictyostelium discoideum AX4]
# 3 >gi|66818355|ref|XP_642837.1|    hypothetical protein DDB_G0276911 [Dictyostelium discoideum AX4]
############## ### End of Example rows of the file #
     
foreach my $line (<FILE>) {
    chomp $line;
  my @fields = split(/\t/, $line);
    $sth->execute(@fields);
}

while (my $row = $sql->fetchrow_arrayref) {
        print join("\t", @$row), "\n";
    }
$dbh->disconnect;

I had thought it to be simple to add the lines by durden_tyler, but not that easy! Thanks again!
 

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MYSQL_DB_QUERY(3)							 1							 MYSQL_DB_QUERY(3)

mysql_db_query - Selects a database and executes a query on it

SYNOPSIS
Warning This function was deprecated in PHP 5.3.0, and will be removed in the future, along with the entirety of the original MySQL exten- sion. Instead, the MySQLi or PDO_MySQL extension should be used. See also MySQL: choosing an API guide and related FAQ for more information. Alternatives to this function include: omysqli_select_db(3) then the query o PDO::__construct resource mysql_db_query (string $database, string $query, [resource $link_identifier = NULL]) DESCRIPTION
mysql_db_query(3) selects a database, and executes a query on it. o $database - The name of the database that will be selected. o $query - The MySQL query. Data inside the query should be properly escaped. o $ link_identifier -The MySQL connection. If the link identifier is not specified, the last link opened by mysql_connect(3) is assumed. If no such link is found, it will try to create one as if mysql_connect(3) was called with no arguments. If no connection is found or established, an E_WARNING level error is generated. Returns a positive MySQL result resource to the query result, or FALSE on error. The function also returns TRUE/ FALSE for INSERT/ UPDATE/ DELETE queries to indicate success/failure. +--------+---------------------------------------------------+ |Version | | | | | | | Description | | | | +--------+---------------------------------------------------+ | 5.3.0 | | | | | | | This function now throws an E_DEPRECATED notice. | | | | +--------+---------------------------------------------------+ Example #1 mysql_db_query(3) alternative example <?php if (!$link = mysql_connect('mysql_host', 'mysql_user', 'mysql_password')) { echo 'Could not connect to mysql'; exit; } if (!mysql_select_db('mysql_dbname', $link)) { echo 'Could not select database'; exit; } $sql = 'SELECT foo FROM bar WHERE id = 42'; $result = mysql_query($sql, $link); if (!$result) { echo "DB Error, could not query the database "; echo 'MySQL Error: ' . mysql_error(); exit; } while ($row = mysql_fetch_assoc($result)) { echo $row['foo']; } mysql_free_result($result); ?> Note Be aware that this function does NOT switch back to the database you were connected before. In other words, you can't use this function to temporarily run a sql query on another database, you would have to manually switch back. Users are strongly encouraged to use the database.table syntax in their sql queries or mysql_select_db(3) instead of this function. mysql_query(3), mysql_select_db(3). PHP Documentation Group MYSQL_DB_QUERY(3)
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