how to calculate all pairwise distances in two dimensions and transform them into a matrix
Hello to all,
I am very new in the shell scripting and I need help. I have data for several individuals in several rows followed by a tag and by 5 values per row, with the name of the individual in the first column, e.g.:
I would like to calculate the sum of the absolute values of the pairwise differences between individuals. For instance:
Additionally, if the tags of two individuals are different, I would like to sum 100 to the final number. So finally the distance between:
IND1 and IND2 would be = 5 + 100 = 105
IND1 and IND3 would be = 6 + 0 = 6
IND2 and IND3 would be = 9 + 100 = 109
After this, I would like to transform this list of distances into a matrix:
Could some one help me with this? Thanks a lot in advance! Best!
Hi,
We are using dimensions 10 (source code control system) for our programs. Some programs contain special characters like ‘$' , ‘#' , ‘ , ‘ etc..
During the check-out process of an item , a unix shell script will be called to process the item. If the item contains a ‘$' character, it will... (0 Replies)
I have a large numbers of files containing data that look like this:
(ID31:0.01682,(ID-123:0.00000,(ID_24:0.00000,ID&890:0.00000):0.00000):0.00000,ID12876:0.00000);
(ID_24:-0.00052,(ID31:0.01697,(ID-123:-0.00059,ID&890:0.03528):0.00037):0.00027,ID12876:0.03484);
I need to find ":" anywhere... (6 Replies)
Hi Friends,
I have an input matrix file like this
Col1 Col2 Col3 Col4
R1 1 2 3 4
R2 4 5 6 7
R3 5 6 7 8
I would like to consider only the numeric values without touching the column header and the row header.
I looked up on the forum's search, and I found this. But, I donno how to... (3 Replies)
I have to remove sequences from a file based on the distance value. I am attaching the file containing the distances (Distance.xls)
The second file looks something like this:
Sequences.txt
>Sample1 Freq 59
ggatatgatgatgaactggt
>Sample1 Freq 54
ggatatgatgttgaactggt
>Sample1 Freq 44... (2 Replies)
This matrix represents correlation values.
Is it possible to calculate the percentage of columns (a1, a2, a3) that have a value >= |0.5| and report the percentage that has positive correlation >0.5 and negative correlation <-0.5 separately. thanx in advance!
input
name a1 a2 a3... (5 Replies)
The following code transform the matrix to columns. Is it possible to do it other way around ( get the input from the output) ?
input
y1 y2 y3 y4 y5
x1 0.3 0.5 2.3 3.1 5.1
x2 1.2 4.1 3.5 1.7 1.2
x3 3.1 2.1 1.0 4.1 2.1
x4 5.0 4.0 6.0 7.0 1.1
output
x1 y1 0.3
x2 y1 1.2
x3... (1 Reply)
File 1 contains the list of words that needed to be randomly paired:
Tiger
Cat
Fish
Frog
Dog
Mouse
Elephant
Monkey
File 2 contains the pairs that should not be used (in any solution) during random pairing.
Elephant-Dog
Cat-Fish
Monkey-Frog
Dog-Elephant, Fish-Cat, Frog-Monkey... (1 Reply)
Discussion started by: sammy777888
1 Replies
LEARN ABOUT DEBIAN
snmp::info::layer3::alcatellucent
Info::Layer3::AlcatelLucent(3pm) User Contributed Perl Documentation Info::Layer3::AlcatelLucent(3pm)NAME
SNMP::Info::Layer3::AlcatelLucent - SNMP Interface to Alcatel-Lucent OmniSwitch
AUTHOR
Bill Fenner
SYNOPSIS
# Let SNMP::Info determine the correct subclass for you.
my $alu = new SNMP::Info(
AutoSpecify => 1,
Debug => 1,
# These arguments are passed directly to SNMP::Session
DestHost => 'myswitch',
Community => 'public',
Version => 2
)
or die "Can't connect to DestHost.
";
my $class = $alu->class();
print "SNMP::Info determined this device to fall under subclass : $class
";
DESCRIPTION
Subclass for Alcatel-Lucent OmniSwitch devices
Inherited Classes
SNMP::Info::Layer3
SNMP::Info::MAU
SNMP::Info::LLDP
Required MIBs
ALCATEL-IND1-DEVICES
ALCATEL-IND1-CHASSIS-MIB
ALU-POWER-ETHERNET-MIB
Note that Alcatel-Lucent distributes their own proprietary version of the POWER-ETHERNET-MIB, but the MIB module name that they
distribute is simply POWER-ETHERNET-MIB. This module must be hand-edited to change the module name to ALU-POWER-ETHERNET-MIB so that
it can be used simultaneously with the standard POWER-ETHERNET-MIB.
Inherited Classes' MIBs
See "Required MIBs" in SNMP::Info::Layer3 for its own MIB requirements.
See "Required MIBs" in SNMP::Info::MAU for its own MIB requirements.
See "Required MIBs" in SNMP::Info::LLDP for its own MIB requirements.
GLOBALS
These are methods that return scalar value from SNMP
$alu->vendor()
Returns 'alcatel-lucent'
$alu->hasCDP()
Returns whether LLDP is enabled.
$alu->model()
Tries to reference $alu->id() to one of the product MIBs listed above
Removes 'device' from the name for readability.
$alu->os()
Returns 'AOS'
$alu->os_ver()
Grabs the os version from "sysDescr"
$alu->ps1_type()
Return the type of the first power supply from the ENTITY-MIB
$alu->ps2_type()
Return the type of the second power supply from the ENTITY-MIB
$alu->ps1_status()
Return the status of the first power supply from the ALCATEL-IND1-CHASSIS-MIB
$alu->ps2_status()
Return the status of the second power supply from the ALCATEL-IND1-CHASSIS-MIB
Global Methods imported from SNMP::Info::Layer3
See documentation in "GLOBALS" in SNMP::Info::Layer3 for details.
Global Methods imported from SNMP::Info::MAU
See documentation in "GLOBALS" in SNMP::Info::MAU for details.
Global Methods imported from SNMP::Info::Layer3
See documentation in "GLOBALS" in SNMP::Info::Layer3 for details.
TABLE METHODS
These are methods that return tables of information in the form of a reference to a hash.
$alu->interfaces()
Returns interface name from "ifName", since the default return value of "ifDescr" includes the OS version.
$alu->fw_mac()
Use the Q-BRIDGE-MIB instead of BRIDGE-MIB
$alu->fw_port()
Use the Q-BRIDGE-MIB instead of BRIDGE-MIB
$alu->bp_index()
Work around various bugs in the BRIDGE-MIB and Q-BRIDGE-MIB implementations, by returning both "ifIndex" and "dot1dBasePort" mappings
to "ifIndex" values.
$alu->c_id()
Returns LLDP information.
$alu->c_if()
Returns LLDP information.
$alu->c_ip()
Returns LLDP information.
$alu->c_platform()
Returns LLDP information.
$alu->c_port()
Returns LLDP information.
$alu->i_duplex_admin()
Returns info from MAU-MIB
$alu->i_speed_admin()
Returns info from MAU-MIB
$alu->peth_port_ifindex()
Returns the "ifIndex" value for power-ethernet ports using the OmniSwitch algorithm.
Table Methods imported from SNMP::Info::Layer3
See documentation in "TABLE METHODS" in SNMP::Info::Layer3 for details.
Table Methods imported from SNMP::Info::MAU
See documentation in "TABLE METHODS" in SNMP::Info::MAU for details.
Table Methods imported from SNMP::Info::LLDP
See documentation in "TABLE METHODS" in SNMP::Info::LLDP for details.
perl v5.12.4 2011-09-28 Info::Layer3::AlcatelLucent(3pm)