thanks the awk code works. But the code replaces the header columns also. The very first line in the file is the header containing column names.
The code should ignore the first line and handle the rest of records. how to do that? Sorry I should have been cleared earlier.
Thanks
Vasanth
Last edited by Scott; 11-14-2011 at 06:13 AM..
Reason: Please use code tags
hi all...
i need your help, because i donīt know what to do...
i have a flat file like this:
B065200512312004123111010000061451 000021853
B065200512312004123111020000621907 000417802
B065200512312004123111030000005214 000005861
B065200512312004123111040000120133 000088448
and i need... (5 Replies)
Hi,
I want to replace a field in a text delimited file with the actual number of records in the same file.
HDR|ABCD|10-13-2008 to 10-19-2008.txt|10-19-2008|XYZ
DTL|0|5464-1|0|02-02-2008|02-03-2008||||F|||||||||
DTL|1|5464-1|1|02-02-2008|02-03-2008|1||JJJ... (3 Replies)
I am attempting to insert multiple lines of text into a specific place in a text file based on the lines above or below it.
For example, Here is a portion of a zone file.
IN NS ns1.domain.tld.
IN NS ns2.domain.tld.
IN ... (2 Replies)
Hi All,
I need a shell script which could insert a sequence number column inside a dat file(pipe delimited).
I have the dat file similar to the one as shown below..
|A|B|C||D|E
|F|G|H||I|J
|K|L|M||N|O
|P|Q|R||S|T
As shown above, the column 4 is currently blank and i need to insert sequence... (5 Replies)
Hi,
I am trying to find the lines in a pipe delimited file where 11th column has not null values. Any help is appreciated. Need help asap please.
thanks in advance. (3 Replies)
Hi,
I am not sure if I've posted this question before.
Anyway, I previously asked about converting lines of text into a comma delimited string. Now I am needing to do the other way around ... :( :o
Can anyone advise how is this possible?
Example as below:
Converting records/lines to... (2 Replies)
Hi All ,
I have pipe delimiter file with 11 columns . I need to insert 4 empty columns after column 10 . and After 11 column I need to insert a column which is having the same value for all the rows .
My file
1|2|3|4|5|6|7|8|9|10|11
New file
... (11 Replies)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Hi,
Apologies in advance to the moderator if I am posting this the wrong way.
I've searched and found the solution to an old post but as it is a very old post, I don't see an option to update it with additional question.
The question I have is in relation to the following post:
How to... (6 Replies)
Discussion started by: newbie_01
6 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)